Pairwise Alignments

Query, 406 a.a., lipoprotein-releasing system transmembrane subunit LolC from Vibrio cholerae E7946 ATCC 55056

Subject, 408 a.a., hypothetical protein from Xanthobacter sp. DMC5

 Score =  105 bits (263), Expect = 2e-27
 Identities = 109/413 (26%), Positives = 178/413 (43%), Gaps = 77/413 (18%)

Query: 36  AGITIGVMSLVTVLSVMNGFEAQLKSRILGVLPQAVVTEAAGKTTLSATPPDFVT----- 90
           +GI IGV  +V + +++ G +A    R+L   PQ           +   PPD V      
Sbjct: 28  SGIAIGVGVIVFMSAMLAGLQANFIKRVLTSQPQ-----------IQLLPPDEVARPLRR 76

Query: 91  ------ALSTQRPPEPLV--------------RSDAVVQSASQLAAGL-----------L 119
                 A   QRP + ++              R D VV + +   A L           L
Sbjct: 77  GEGVFEAAVVQRPAQRVLSIDQWQAIRDAMRARPDVVVAAPTASGAMLAVRGDASRSITL 136

Query: 120 IGIEPQQNDPIEQ---HLIAGRVTALQAGEYQLFLGHLLARSLNVTVGDKVRLMVTEASQ 176
            G+EP+Q   I +   ++++G    L+ G   + +G  LA+ L  +VGDK+ +   EA  
Sbjct: 137 TGMEPEQYFKIVRVPDYIVSGE---LRLGTDDILIGTELAKDLGASVGDKLNVTSAEARS 193

Query: 177 FTPLGRLPSQRNFTVAGIFNTGSDVDGQLMV-THLRDAAKLLRYDAQTISGWRLFFDDPF 235
                     R  T+ GIF+ G+    Q      LR A  LL      ++   L   D +
Sbjct: 194 ----------RILTITGIFDLGNKGANQRNTFVALRTAQSLLNLIGG-VTTIDLTVSDIY 242

Query: 236 VVSQLAEQ---PLPQDWQWSDWREQRGELFQAVRMEKNMMGLMLGLIVGVAAFNIISALI 292
               +A++    LP   Q   W     + F AVR ++N   L+   +    AF I + LI
Sbjct: 243 AAETIAQEIEASLPV--QAESWIATNAQFFTAVRAQQNSNTLIRLFVALSVAFGIAAVLI 300

Query: 293 MVVMEKQAEVAILKTQGMQSQHVLAIFMVQGASSGVIGALVGGLLGVLLAANLNSLMEAL 352
           + V+++  ++ IL+  G   + +L IF++QG   G +G+LVG +LG       + L   +
Sbjct: 301 VSVIQRSKDIGILRAMGTARRQILQIFLIQGGVLGFLGSLVGSVLGAGALMLWHHLARQV 360

Query: 353 -GVALFSVGGSLPVAIDPLQIVLVIVLAIVLSLLATLFPAYRASSVQPAEALR 404
            G  LF      P+ ++P   V    +A +  + A + PA RA+S+ P EA+R
Sbjct: 361 DGTELF------PLVLEPGLFVAAAAIATLTGVAAGVAPAVRAASLDPVEAIR 407