Pairwise Alignments

Query, 406 a.a., lipoprotein-releasing system transmembrane subunit LolC from Vibrio cholerae E7946 ATCC 55056

Subject, 414 a.a., multidrug ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

 Score =  272 bits (696), Expect = 1e-77
 Identities = 158/418 (37%), Positives = 240/418 (57%), Gaps = 22/418 (5%)

Query: 5   MFHPISAFIGLRYLRGRSGDRFSRFVSYMSTAGITIGVMSLVTVLSVMNGFEAQLKSRIL 64
           MF P+S FIG RY R +  +RF  F+S  S  G+ +GV++++ VLSVMNGF+ ++ SRIL
Sbjct: 1   MFRPLSIFIGTRYTRAKRRNRFVSFISMTSMIGLALGVLAMIVVLSVMNGFQREMSSRIL 60

Query: 65  GVLPQAVVTEAAGKTTLSATPPDFVTALSTQRPPE--PLVRSDAVVQSASQLAAGLLIGI 122
           G++P A +    G   +    P    A+   +     P  + D +      +    + GI
Sbjct: 61  GMVPHATIV---GVNPIDDWQPVAAAAMKNPQVTAAVPFTQMDGMFSYKGAMQPIEISGI 117

Query: 123 EPQQNDPIE---QHLIAGRVTALQAGEYQLFLGHLLARSLNVTVGDKVRLMVTEASQFTP 179
           +P Q   +    QH++ G++  L+ GE+ + +G + AR   + VGDK+ L+V E S   P
Sbjct: 118 DPAQEGKVSIVAQHIVRGKLDDLKPGEFGVVVGEITARRFRLNVGDKLTLIVPEIST-AP 176

Query: 180 LGRLPSQRNFTVAGIFNTGSDVDGQLMVTHLRDAAKLLRYDAQTISGWRLFFDD----PF 235
            G  P  +   V GIF  G+++DG + + H+ DAA++  +    +   RL   D    P 
Sbjct: 177 GGITPRMQRLNVVGIFKVGAELDGSMAMIHMADAAEIQHWQPNQVQSVRLAVKDLYAAPK 236

Query: 236 VVSQLAEQPLPQDWQWSDWREQRGELFQAVRMEKNMMGLMLGLIVGVAAFNIISALIMVV 295
           V S +A   L   ++  DW   +G LF A++MEK M+GL+L +IV VAAFNII+ LIMVV
Sbjct: 237 VSSDIAAS-LGAAYKPDDWTHTQGSLFSAMKMEKTMIGLLLLMIVAVAAFNIIATLIMVV 295

Query: 296 MEKQAEVAILKTQGMQSQHVLAIFMVQGASSGVIGALVGGLLGVLLAANLNSLM----EA 351
            +K A++AIL+T G   + ++AIFMVQG   G++G L+GG+LGV+ A N++ L+      
Sbjct: 296 NDKGADIAILRTIGATPRQIMAIFMVQGTVIGIVGTLIGGVLGVIAALNVSELVGWVERV 355

Query: 352 LGVALFSVG----GSLPVAIDPLQIVLVIVLAIVLSLLATLFPAYRASSVQPAEALRY 405
            G  +FS       +LP  +    +VL+     VLS LATL+PAYRA+ ++PA ALRY
Sbjct: 356 TGQHIFSSDVYFVSNLPSELQGGDVVLICTAGFVLSFLATLYPAYRAAKIEPAHALRY 413