Pairwise Alignments

Query, 406 a.a., lipoprotein-releasing system transmembrane subunit LolC from Vibrio cholerae E7946 ATCC 55056

Subject, 420 a.a., ABC-type antimicrobial peptide transport system, permease component from Variovorax sp. SCN45

 Score = 58.2 bits (139), Expect = 5e-13
 Identities = 40/144 (27%), Positives = 76/144 (52%), Gaps = 6/144 (4%)

Query: 260 ELFQAVRMEKNMMGLMLGLIVGVAAFNIISALIMVVMEKQAEVAILKTQGMQSQHVLAIF 319
           EL+  + + +N + LM  L+  V+   ++S ++  + E++ E+A+L+  G   +HVLA+ 
Sbjct: 279 ELWSVIGIGENALLLMSALVALVSLAGLVSVVMAGLNERRRELAVLRAVGAGLRHVLALL 338

Query: 320 MVQGASSGVIGALVGGLLGVLLAANLNSLMEALGVALFSVGGSLPVAIDPLQIVLVIVLA 379
            ++GA   V+G   G ++ VL  A L+  ++A        G +L ++   L   L++   
Sbjct: 339 ALEGAMVTVLGVAFGVVMAVLGIALLSPWLQA------QFGLTLSLSEPTLNEWLLMASL 392

Query: 380 IVLSLLATLFPAYRASSVQPAEAL 403
           +V   LA+L P  RA  +  A+ L
Sbjct: 393 LVAGWLASLLPGIRAYRLSLADGL 416