Pairwise Alignments

Query, 406 a.a., lipoprotein-releasing system transmembrane subunit LolC from Vibrio cholerae E7946 ATCC 55056

Subject, 401 a.a., ABC-type antimicrobial peptide transport system, permease component from Sphingobium sp. HT1-2

 Score = 65.5 bits (158), Expect = 3e-15
 Identities = 88/406 (21%), Positives = 182/406 (44%), Gaps = 54/406 (13%)

Query: 31  SYMSTAGITIGVMSLVTVLSVMNGFEAQLKSRILGV---LPQAVVTEAAGKTTLSATPPD 87
           S+++T GI IGV ++VT++++ NG  A ++ +I  +   + Q    +  G+      PP+
Sbjct: 20  SFLTTLGIIIGVAAVVTMVTLGNGATAAVREQISSLGANVLQLRPGQGFGRGGGGPRPPN 79

Query: 88  F----VTALSTQ----RPPEPLVRSDAVVQSASQLAAGLLIGIEPQQNDPIEQHLIAGRV 139
           F    +TA+  Q    R   P+V+S           +  + G     +     ++  GR+
Sbjct: 80  FKEADLTAIENQLTGVRAVAPVVQSSGTAIYEGNNWSTTVYGTTSAYSQVQSWNVSEGRL 139

Query: 140 ---TALQAGEYQLFLGHLLARSL---NVTVGDKVRLMVTEASQFTPLGRLPSQRNFTVAG 193
                 +AG+    +G+ +  +L   N  +G ++R+          +G L ++      G
Sbjct: 140 FMPDEEEAGKSVCIIGNTVRTNLFQGNDPIGKRMRIKGVSCQV---VGVLATRGQ----G 192

Query: 194 IFNTGSDVDGQLMVTHLRDAAKLLRYDAQTISGWRLFFDDPF---VVSQLAEQPLPQDWQ 250
            F    DV    +V  ++   +    D + IS   +  DD +    V    EQ + +  +
Sbjct: 193 GFGDQDDV----VVMPIKFVQRRFTGD-RDISQIMVAVDDAYDSATVQDSLEQLMRERRK 247

Query: 251 WSDWREQRGELFQAVRMEKNMMG---LMLGLIVGVAAFN-------IISALIMVVMEKQA 300
                E    +F   ++   + G   ++  ++  VAA +       I++ +++ V E+  
Sbjct: 248 IKAGAEDNFNVFDTKQISDTLTGTTTILTQIVAAVAAISLLVGGIGIMNIMLVSVTERTR 307

Query: 301 EVAILKTQGMQSQHVLAIFMVQGASSGVIGALVGGLLGVLLAANLNSLMEALGVALFSVG 360
           E+ I    G  ++ VL  F+V+     ++ + +GGL+G+++A     L+ ++G+A     
Sbjct: 308 EIGIRLAIGAVAREVLMQFLVEA----IVLSCMGGLIGLVIA-----LIASVGIAPLM-- 356

Query: 361 GSLPVAIDPLQIVLVIVLAIVLSLLATLFPAYRASSVQPAEALRYE 406
             +P   DP   ++  + +  + ++   FPA RA+S+ P +ALR+E
Sbjct: 357 -KVPFTFDPQVNLIAFLFSAAIGVVFGYFPARRAASLNPIDALRHE 401