Pairwise Alignments

Query, 406 a.a., lipoprotein-releasing system transmembrane subunit LolC from Vibrio cholerae E7946 ATCC 55056

Subject, 415 a.a., ABC transporter permease from Magnetospirillum magneticum AMB-1

 Score =  104 bits (259), Expect = 5e-27
 Identities = 105/435 (24%), Positives = 188/435 (43%), Gaps = 63/435 (14%)

Query: 8   PISAFIGLRYLRGRSGDRFSRFVSYMSTAGITIGVMSLVTVLSVMNGFEAQLKSRILGVL 67
           P+   I L++LR R      R  + +S  G+++GV   + + ++M GF+    +RI+ V 
Sbjct: 3   PLGLSIALQHLRHR------RRQTLVSLLGVSLGVAFFIGISAMMQGFQRDFIARIIDVQ 56

Query: 68  PQAVVTE---AAGKTTLSATPPDFVTALSTQRPPEPL------------VRSDAVVQSAS 112
           P  +V +   AA K  +    PD   +L   +P E +            +     V  A 
Sbjct: 57  PHIIVKDEVRAAPKQAVERAYPDGAVSLRGLKPREEVRGIRGARNMLATLEEMPGVHVAP 116

Query: 113 QLAAGLLI------------GIEPQQN---DPIEQHLIAGRVTALQAGEYQLFLGHLLAR 157
            L+  LL+            GI+P++      +E+ L++G + AL      + +G  +A 
Sbjct: 117 ALSGNLLLRFGGKDVSVNVTGIQPERERLVTHLEKDLLSGSLDALYTTSNAIIIGEGIAA 176

Query: 158 SLNVTVGDKVRLMVTEASQFTPLGRLPSQRNFTVAGIFNTGSDVDGQLMVTHLRDAAKLL 217
              +   D +       S  +P+G +   +   V GIF +   +        L   A++L
Sbjct: 177 KAGIRKDDLI-------SAVSPVGVVLKMK---VVGIFRSNITLLDNFETYTLLKKAQVL 226

Query: 218 RYDAQTISGWRLFFDDPFVVSQLAEQPLPQ-DWQWSDWREQRGELFQAVRMEKNMMGLML 276
           +  A  ++   L  DD    + LA     Q  ++   W+EQ   +     ++  +M   +
Sbjct: 227 QNRANVVNRLNLRLDDVEQAAPLAATIERQFGYRSESWQEQSRNVLGIFVIQNAIMYSTV 286

Query: 277 GLIVGVAAFNIISALIMVVMEKQAEVAILKTQGMQSQHVLAIFMVQGASSGVIGALVGGL 336
             I+ VA F I + +  VV EK  ++ ILK+ G + + +  IF+++G   G+IG ++G L
Sbjct: 287 SAILIVACFGIFNVISTVVFEKTRDIGILKSMGFRDKDIRRIFVMEGLIVGLIGTVIGWL 346

Query: 337 LG---VLLAANLNSLME----ALGVALFSVGGSLPVAIDPLQIVLVIVLAIVLSLLATLF 389
           +G   +   A+L+  ME    A G  L+           P    +   +AI  + LA   
Sbjct: 347 MGWGLIEFMASLDFQMEGFVKAQGFVLYRT---------PKHYAISAAMAIASATLAAWV 397

Query: 390 PAYRASSVQPAEALR 404
           PA RAS + P + +R
Sbjct: 398 PARRASRLNPVDIVR 412