Pairwise Alignments

Query, 406 a.a., lipoprotein-releasing system transmembrane subunit LolC from Vibrio cholerae E7946 ATCC 55056

Subject, 435 a.a., ABC transporter, membrane spanning protein from Agrobacterium fabrum C58

 Score =  202 bits (513), Expect = 2e-56
 Identities = 139/417 (33%), Positives = 218/417 (52%), Gaps = 20/417 (4%)

Query: 8   PISAF---IGLRYLRGRSGDRFSRFVSYMSTAGITIGVMSLVTVLSVMNGFEAQLKSRIL 64
           P SAF   +  RYLR R  + F   ++  S  GI +GV +L+ V++VMNGF  +L SRIL
Sbjct: 21  PFSAFERMVAWRYLRSRRKEAFISVIAGFSFVGIMLGVATLIIVMAVMNGFRTELISRIL 80

Query: 65  GVLPQAVVTEAAGKTTLSATPPDFVTALSTQRPPEPLVRSDAVVQSASQLAAGLLI-GIE 123
           G+    +V                 +A+       PLV    +        +G L+ G+ 
Sbjct: 81  GINGHMIVQPIDQPFNNYDELAKKFSAVPGVTMALPLVEGQTLASGRGGAGSGALVRGVR 140

Query: 124 PQQNDPIEQ---HLIAGRVTALQAGEYQLFLGHLLARSLNVTVGDKVRLMVTEASQFTPL 180
            +  D I++   ++  G +    AG+  L +G  LA  L VT GD + L+  E    TP+
Sbjct: 141 QEDIDKIKEVATNIKTGDLVGFMAGDGVL-VGSRLASQLGVTAGDDITLISPEGD-VTPM 198

Query: 181 GRLPSQRNFTVAGIFNTG-SDVDGQLMVTHLRDAAKLLRYDA--QTISGWRLFFDDPFVV 237
           G  P  +++ ++G+F  G S+ D  ++   L +A      +   Q+I  +    DD   +
Sbjct: 199 GINPRVKSYKISGVFEIGMSEYDASMIYMPLSEAQLYFNANGIVQSIELYVSRPDDVDGI 258

Query: 238 SQLAEQPLPQDWQWSDWREQRGELFQAVRMEKNMMGLMLGLIVGVAAFNIISALIMVVME 297
             L EQ   +    +DWR++    F A+++E+N+M ++L LIV VAA NIIS LIM+V +
Sbjct: 259 RPLVEQAAERQIYITDWRQRNQTFFSALQVERNVMFMILTLIVLVAALNIISGLIMLVKD 318

Query: 298 KQAEVAILKTQGMQSQHVLAIFMVQGASSGVIGALVGGLLGVLLAANLNSLME----ALG 353
           K +++AIL+T G  S  V+ IF + GA+ G +G   G  LGVL+  N+ S+ +      G
Sbjct: 319 KGSDIAILRTMGASSGAVMRIFFMTGAAIGTVGTFAGVALGVLVCLNVESIRQFFSWVSG 378

Query: 354 VALFSVG----GSLPVAIDPLQIVLVIVLAIVLSLLATLFPAYRASSVQPAEALRYE 406
             LF         LP  +D  + + V+++A+ LS LAT+FPA+RAS + P +ALRYE
Sbjct: 379 TVLFDPQLYFLSQLPAEMDLSETITVVIMALTLSFLATIFPAWRASKLDPVQALRYE 435