Pairwise Alignments

Query, 582 a.a., lipid A export ATP-binding/permease MsbA from Vibrio cholerae E7946 ATCC 55056

Subject, 616 a.a., Lipid A export ATP-binding/permease protein MsbA from Xanthobacter sp. DMC5

 Score =  301 bits (771), Expect = 5e-86
 Identities = 187/578 (32%), Positives = 304/578 (52%), Gaps = 4/578 (0%)

Query: 5   SDESNWQTFKRLWTYIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAESNFL 64
           +DE+N    + L +  R +  G V++ + +   AA    +  L+   ++  F +     +
Sbjct: 15  TDETNAVLRRLLLSDGRKHWKGYVLAFVFMGTMAACTAGLAYLMNDAVNAIFVHPTPAAV 74

Query: 65  RILPFMILGLMFVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGL 124
             +  +++ L  ++G S +  S  ++ +   VV   ++R F+  +     +F    T  +
Sbjct: 75  WAVSGIVMVLSIIKGASAYGQSITMARIGNRVVADNQKRAFDRLLLQDAAYFGHRHTAEI 134

Query: 125 LSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISF 184
            +R T  +    GA    + SI R+  S++ L  + F     L+++ +VV P        
Sbjct: 135 TTRFTAGASGARGALDLVVTSIGRDALSLVMLAGVAFVQDPFLAVIALVVMPAAVIGTRK 194

Query: 185 VSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKL 244
           + K+ + I     T+   ++S   ++ +G + V +Y  + V R+R  K  + +     +L
Sbjct: 195 LIKKAKTIFTTGFTSGVKLSSIVMEVFQGIRTVKAYTLEPVMRERTHKFIDDVEINANRL 254

Query: 245 VSAQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSV 304
           V  Q+ + P+++ +  LA+  V+  A  + I    +PG F  V +A+     P K L+ +
Sbjct: 255 VRTQAKSSPLMETLGGLAIGGVILYAGYNVIELGRSPGQFFSVLTALLLAYEPAKRLSRL 314

Query: 305 TSEFQRGMAACQTLFGLMDLETER--DNGKYEAERVNGEVDVKDVTFTYQGKEKPALSHV 362
             E    +   + LF L+D        +G     R  G V+ KDV F Y+  E   L  +
Sbjct: 315 HVELVSHVMGARMLFDLLDAPAPDADSSGVGALPRPRGRVEFKDVVFAYRPGEN-VLRSL 373

Query: 363 SFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALV 422
                 G+T ALVG+SG GK+TI NL  RFYD  SG++ +D  D R    T++R   ALV
Sbjct: 374 DLVAEPGRTTALVGQSGGGKTTIINLIERFYDPQSGAVLIDDVDTRSVSRTSVRASVALV 433

Query: 423 SQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLS 482
           SQ+V+LF+ TI  NI +   G  + E+I  AA+ AHA  FI +   G DT +GE+G  LS
Sbjct: 434 SQDVYLFSGTIRENIGFGRPGA-SEEEIVAAAKAAHAHPFIMSFENGYDTAVGEHGAQLS 492

Query: 483 GGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTI 542
           GGQRQR+AIARA L++AP+L+LDEAT+ALD+ESE  +Q AL EL   +T +VIAHRL T+
Sbjct: 493 GGQRQRIAIARAFLKNAPILLLDEATAALDSESEAEVQKALAELAHERTTIVIAHRLQTV 552

Query: 543 EQADEILVVDEGEIIERGRHADLLAQDGAYAQLHRIQF 580
            +AD I V++ G ++E G H +L+A+ G Y   +  QF
Sbjct: 553 VRADRICVIEGGRVVESGTHDELIARRGRYYGFYFAQF 590