Pairwise Alignments

Query, 582 a.a., lipid A export ATP-binding/permease MsbA from Vibrio cholerae E7946 ATCC 55056

Subject, 604 a.a., Multidrug resistance ABC transporter ATP-binding/permease protein BmrA from Xanthobacter sp. DMC5

 Score =  291 bits (746), Expect = 4e-83
 Identities = 179/566 (31%), Positives = 299/566 (52%), Gaps = 5/566 (0%)

Query: 19  YIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAESNFLRILPFMILGLMFVR 78
           Y++ Y+  +  +  AL+  A A   +   ++ ++D GF    +  +     +++ +  V 
Sbjct: 36  YLKRYRGRVAAALGALLAAALATLALPIAVRRMIDFGFAEDHAGLVDQYFGVLVAVAAVL 95

Query: 79  GLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSEQVAGA 138
            L+  A  Y ++ +   VV  +R  +F   + +   F+D   +G L SR+T D+ Q+  A
Sbjct: 96  ALASAARYYLVTTLGERVVSDLRTAVFARLVTLDGAFYDSARSGELTSRLTADTTQLKSA 155

Query: 139 TSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQT 198
              +  + +R     IG + +M   S +LS +++V  P++   +    ++ R+++R  Q 
Sbjct: 156 VGASASTALRNLMMCIGSVAMMVVTSPRLSGLVLVAIPIIVLPLMASGRKVRRLTRQAQD 215

Query: 199 AMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQMI 258
            +   ++ A + L   + + +   + V R+RFD           +   A+     +   +
Sbjct: 216 TLADASAYAAEALNSMRALQAASAEGVARQRFDGAVEEAFGAARQATQARGWLTGIAIFL 275

Query: 259 ASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTL 318
              ++ AVL+  +   +   +T G               L  L+    E      A + +
Sbjct: 276 VFGSVVAVLWAGAQSVLAGTMTSGALGQFVLYAVLAAASLGNLSETWGEMSAAAGAAERI 335

Query: 319 FGLMDLETERDNGKYEAE---RVNGEVDVKDVTFTYQGK-EKPALSHVSFSIPQGKTVAL 374
             L+ +E +            R++G +   +V+F+Y  + ++ AL+ ++FSI  G+ VAL
Sbjct: 336 GELLKVEPQVRPPARPVPLPARISGAIRFDEVSFSYPTRPDQSALAAIAFSIRPGERVAL 395

Query: 375 VGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIA 434
           VG SG+GKST+  L  RFYD  +G I LDG D+R+     +RR  ALV Q V +F D++ 
Sbjct: 396 VGPSGAGKSTVFQLLERFYDPQAGRILLDGIDIREADPVAVRRQMALVPQEVAIFADSVR 455

Query: 435 NNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARA 494
            NI      E T  ++E+A R A   EF+  +PQG DT++GE G  LSGGQRQR+ IARA
Sbjct: 456 ANIRLGRP-EATDAEVEEAGRAALVDEFVARLPQGWDTMVGERGVMLSGGQRQRIVIARA 514

Query: 495 LLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEG 554
           +LR AP+L+LDEATSALD ESE  +Q AL+   + +T LVIAHRLST+  AD ILV++ G
Sbjct: 515 ILRGAPILLLDEATSALDAESETLVQTALERSMEGRTTLVIAHRLSTVLSADRILVMEAG 574

Query: 555 EIIERGRHADLLAQDGAYAQLHRIQF 580
            I++ G HA+L+A+ G YA+L ++QF
Sbjct: 575 RIMDEGTHAELVAKGGLYARLAQLQF 600