Pairwise Alignments

Query, 582 a.a., lipid A export ATP-binding/permease MsbA from Vibrio cholerae E7946 ATCC 55056

Subject, 591 a.a., ABC transporter ATP-binding protein from Pseudomonas simiae WCS417

 Score =  321 bits (823), Expect = 5e-92
 Identities = 197/571 (34%), Positives = 316/571 (55%), Gaps = 10/571 (1%)

Query: 19  YIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAESNFLRILPFMILGLMFVR 78
           +I  Y+   + + +AL++ A     M   ++ L+D+GF     + L     + + L+   
Sbjct: 16  FIAPYRWHALGALLALIVTAGITLSMGQGIRLLVDQGFMTQSPHLLNQSIGLFMMLVLGL 75

Query: 79  GLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSEQVAGA 138
            +  FA  Y +SW+   VV  +RR++FNH +++   F++   +  + SR+T D+  +   
Sbjct: 76  AVGTFARFYLVSWIGERVVADIRRQVFNHLIYLHPGFYENNRSSEIQSRLTTDTTLLQSV 135

Query: 139 TSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQT 198
              +L   +R    +IG + L+F  + +L+ +++V  P+V   I    +R R +SR  Q 
Sbjct: 136 IGSSLSLFLRNALMVIGGIVLLFVTNPKLTSIVVVALPLVLAPILIFGRRVRSLSRQSQD 195

Query: 199 AMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQMI 258
            +  V S   + L   K V +Y  Q  + +RF            K ++ ++    ++ M+
Sbjct: 196 RIADVGSYVSETLGQIKTVQAYNHQVQDEQRFAVTVEEAFTTARKRIAQRAWLITLVIML 255

Query: 259 ASLALFAVLFLASVDSIRAELTPGTFT--VVFSAMFGLMRPLKALTSVTSEFQRGMAACQ 316
              A+  +L++  +D I   ++ G     V +S + G    +  L+ V  E QR   A +
Sbjct: 256 VLGAVGVMLWVGGMDVINGRISGGELAAFVFYSLIVG--SAVGTLSEVLGELQRAAGAAE 313

Query: 317 TLFGLMDLETERD---NGKYEA-ERVNGEVDVKDVTFTYQGK-EKPALSHVSFSIPQGKT 371
            +  L+    E      G  +  ERV+G + ++D+ F+Y  + +  A+  ++ +I  G+T
Sbjct: 314 RIGELLQSSNEIQAPATGTVQLPERVSGRMALQDLRFSYPSRPDSYAIDGLNLTINPGET 373

Query: 372 VALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFND 431
           +ALVG SG+GKSTI +L  RFYD   G I L+GH + +    +LRRHFALVSQ+  LF  
Sbjct: 374 LALVGPSGAGKSTIFDLLLRFYDPQQGRILLEGHPLTELDPMDLRRHFALVSQSPALFFG 433

Query: 432 TIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAI 491
           ++  NI Y      T EQ+E AAR AHA +FI  MP G  T +G+ G  LSGGQRQR+AI
Sbjct: 434 SVEENIRYG-NPTATTEQVEAAARIAHAHDFILQMPDGYQTHLGDGGMGLSGGQRQRLAI 492

Query: 492 ARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVV 551
           ARALL DAP+L+LDEATSALD +SE  IQ AL +L + +T LVIAHRL+T++ AD I V+
Sbjct: 493 ARALLVDAPILLLDEATSALDAQSEHLIQQALPQLMQGRTTLVIAHRLATVKNADRIAVM 552

Query: 552 DEGEIIERGRHADLLAQDGAYAQLHRIQFGE 582
           D+G+++  G H  L+A +  YA+L  +QF +
Sbjct: 553 DQGKLVAVGTHQQLIASNPLYARLAALQFSD 583