Pairwise Alignments

Query, 582 a.a., lipid A export ATP-binding/permease MsbA from Vibrio cholerae E7946 ATCC 55056

Subject, 586 a.a., Efflux ABC transporter, permease/ATP-binding protein from Variovorax sp. SCN45

 Score =  303 bits (776), Expect = 1e-86
 Identities = 193/573 (33%), Positives = 304/573 (53%), Gaps = 14/573 (2%)

Query: 19  YIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGN----AESNFLRILPFMILGL 74
           ++R Y+  +V++ + LV+ A         L+ L+D GF N    A++  LR     +  +
Sbjct: 15  FLRPYRVQIVLAGVFLVMAAVTTLAFPIALRSLIDGGFVNPDKGAQTMALRDHFGALFAV 74

Query: 75  MFVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSEQ 134
               GL   A  Y +SW+   V   +R  ++   +     FF+   TG +LSR+T D+  
Sbjct: 75  AVALGLFSAARFYTVSWLGERVTADIRNAVYGRVLKQSPAFFETTQTGEVLSRLTADTTL 134

Query: 135 VAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKISR 194
           V      +L   +R     +G L ++ W +  + + ++ +  +V     +  +R RK+SR
Sbjct: 135 VQTVVGSSLSMGLRNAVMGVGALAVLVWTNPYVMVQVLGILVLVVLPSMWFGRRVRKLSR 194

Query: 195 NMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPV 254
             Q  +   ++ A ++L    VV SY  +  E  RF+  + +  +  ++   A+S+    
Sbjct: 195 ASQDRVADSSAIAAEVLNAIPVVQSYTAEGREASRFNGSTENAFRTAVRRTKARSVLVAF 254

Query: 255 IQMIASLALFAVLFLASVDSIRAELTPGTF--TVVFSAMFGLMRPLKALTSVTSEFQRGM 312
           I +  S AL   L+  +   +R ++T G    TVV+ A+  L      L  V  +  R  
Sbjct: 255 IIIATSAALLWGLYQGTQAVLRGDITAGHLGQTVVYVAI--LASATAVLGEVYGDLLRAA 312

Query: 313 AACQTLFGLMD----LETERDNGKYEAERVNGEVDVKDVTFTYQGKE-KPALSHVSFSIP 367
            A + L  L+     + +  +            +    VTF Y  +   PAL   S  + 
Sbjct: 313 GATERLMELLHAPSAIFSPANPAVTPVPAAGSAIRFDAVTFHYPSRPGTPALRDFSLDVA 372

Query: 368 QGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVH 427
            G+TVALVG SG+GKST+  L  R+YD  SG + LDG  +    L++LR    LV Q+  
Sbjct: 373 PGETVALVGSSGAGKSTVFQLLLRYYDPQSGRLILDGAPLASLALSDLRTRIGLVPQDAV 432

Query: 428 LFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQ 487
           +F+ +   NI Y    E T E++  AAR A A +F++ +P+G DT +GE G  LSGGQRQ
Sbjct: 433 IFSTSAFENIRYGRP-EATAEEVHAAARAAFAHDFLQALPEGYDTFLGERGVRLSGGQRQ 491

Query: 488 RVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADE 547
           R+AIARA+L++ P+L+LDEATSALD ESER +QAAL+   + +T LVIAHRL+T+++AD 
Sbjct: 492 RIAIARAILKNPPLLLLDEATSALDAESERMVQAALESAMEGRTTLVIAHRLATVQKADR 551

Query: 548 ILVVDEGEIIERGRHADLLAQDGAYAQLHRIQF 580
           I+V+D G I+E+G HA L+AQ G YA+L  +QF
Sbjct: 552 IIVLDHGGIVEQGTHAALVAQGGVYARLAALQF 584