Pairwise Alignments

Query, 582 a.a., lipid A export ATP-binding/permease MsbA from Vibrio cholerae E7946 ATCC 55056

Subject, 555 a.a., Lipid A export permease/ATP-binding protein MsbA from Variovorax sp. SCN45

 Score =  388 bits (996), Expect = e-112
 Identities = 209/545 (38%), Positives = 332/545 (60%), Gaps = 4/545 (0%)

Query: 35  VINAAADTYMISLLKPLLDEGFGNAESNFLRILPFMILGLMFVRGLSGFASSYCLSWVSG 94
           ++ A  +  M +LLKPLLD GF   E   L  +P  +L L  VRG++ F S Y LS ++ 
Sbjct: 1   MLAAITEPLMAALLKPLLDRGFTRGEMP-LWFVPAAVLLLFAVRGIAQFISQYALSRIAN 59

Query: 95  NVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSEQVAGATSRALVSIVREGASII 154
             + ++RR +F   +   +  F ++S   L + + Y+ +  A    +AL+ + R+G ++I
Sbjct: 60  EGMQKLRRVMFERLLGAELALFTRQSASALSNTVVYEVQTGAMLLVQALLGLSRDGFTLI 119

Query: 155 GLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGH 214
            LL  + + +W+L+L++  + P +++ +   SKR  ++++  Q A   +    E+ +  H
Sbjct: 120 ALLGYLVYLNWKLTLIVAFLVPSISWIMKVFSKRLYRLTQQGQQATDELAYVVEENVLAH 179

Query: 215 KVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQMIASLALFAVLFLASVDS 274
           +VV  +G +  + +RF+++S  + +  +K   AQ+   P+ QM+ASLAL  V+ +A   S
Sbjct: 180 RVVRLHGAEGAQGRRFEQLSQRLNRLAVKSTIAQAATTPLTQMMASLALSVVVMIALWQS 239

Query: 275 IRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERDNGKYE 334
            +   T G F    +AM  L+ P++ L  V     RG+AA +    L+D       G + 
Sbjct: 240 GKQGFTVGGFVAYITAMLMLIAPIRRLAEVAGPITRGLAALERGLVLIDEVAPESQGTFR 299

Query: 335 AERVNGEVDVKDVTFTYQGK-EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFY 393
            E   G +++++V  +Y+G  E+ AL  V+ +I  G+ VA VG SGSGK+T+ NL  RF 
Sbjct: 300 IEHAEGRIELRNVQVSYRGDDEQRALDGVNLTIEPGQVVAFVGPSGSGKTTLVNLLPRFV 359

Query: 394 DVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQA 453
              SG + LDGHD  +++L +LR  FA+VSQ+V + N+T+A N+A  +E +  RE++ Q 
Sbjct: 360 QPSSGQVLLDGHDTSEWELKSLRAQFAMVSQDVVMLNETLAANVALGSEID--RERVLQC 417

Query: 454 ARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDT 513
              A+    +EN+PQG+DTV+G N T LSGGQRQR+AIARAL ++APVL+LDEATSALDT
Sbjct: 418 IDAANLSSHVENLPQGIDTVLGHNATQLSGGQRQRLAIARALYKNAPVLLLDEATSALDT 477

Query: 514 ESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQDGAYA 573
           ESER +Q AL  L +N+T L++AHRLSTI+ AD I+V+++G I E+G H  L+  DG YA
Sbjct: 478 ESERLVQDALQRLMQNRTTLIVAHRLSTIQHADRIIVMEQGRIAEQGSHEQLMQLDGLYA 537

Query: 574 QLHRI 578
           +L  +
Sbjct: 538 RLQTL 542