Pairwise Alignments

Query, 582 a.a., lipid A export ATP-binding/permease MsbA from Vibrio cholerae E7946 ATCC 55056

Subject, 602 a.a., Lipid A export ATP-binding/permease protein MsbA from Pseudomonas putida KT2440

 Score =  482 bits (1241), Expect = e-140
 Identities = 254/587 (43%), Positives = 382/587 (65%), Gaps = 15/587 (2%)

Query: 8   SNWQTFKRLWTYIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAES------ 61
           S+ + + RL +Y++ Y    ++S +  VI A+    +  +LK  +D G  N E+      
Sbjct: 12  SSLKIYFRLLSYVKPYVGIFLLSIVGFVIFASTQPMLAGILKYFVD-GLSNPEAVLFPNV 70

Query: 62  ------NFLRILPFMILGLMFVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRF 115
                   L+ +P +I+ +   +GL  F  +Y L+ VS ++V  +R  LFN  + +P R+
Sbjct: 71  PYLRDLQLLQAVPLLIILIAAWQGLGSFLGNYFLAKVSLSLVHDLRVALFNKLLVLPNRY 130

Query: 116 FDQESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVA 175
           FD  ++G L+SRIT++   V GA + A+  ++REG +++ L   + W +W L+LV++ + 
Sbjct: 131 FDNHNSGHLISRITFNVTMVTGAATDAIKVVIREGLTVVFLFAYLLWMNWHLTLVMVAIL 190

Query: 176 PVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSN 235
           PV+A  +S  SK+FRK S+ +Q AMG VT  A + ++G++VV S+GG+  E++RF + S 
Sbjct: 191 PVIAVMVSIASKKFRKQSKKIQVAMGDVTHVASETIQGYRVVRSFGGEAYEQQRFGQASQ 250

Query: 236 SMRQQTMKLVSAQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLM 295
           S   + +++    S+  P++Q++   A+ A++FL  V  +R + T G      +A   L 
Sbjct: 251 SNTDKQLRMTKTGSLYTPMLQLVIYSAMAALMFL--VLFLRGDSTAGDLVAYITAAGLLP 308

Query: 296 RPLKALTSVTSEFQRGMAACQTLFGLMDLETERDNGKYEAERVNGEVDVKDVTFTYQGKE 355
           +P++ L+ V+S  Q+G+A  +++F  +D   E D G  E ERV G ++V++++FTY G E
Sbjct: 309 KPIRQLSEVSSTIQKGLAGAESIFEQLDEAPEVDTGTVEKERVEGRLEVRNLSFTYPGTE 368

Query: 356 KPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNL 415
           +  LS +SF    G+ +ALVGRSGSGKST+A L  RFY  D G I LDG ++  Y+L NL
Sbjct: 369 REVLSDISFVAEPGQMIALVGRSGSGKSTLAALIPRFYHHDKGQILLDGVEIEHYRLRNL 428

Query: 416 RRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIG 475
           RRH + V+Q+V LFNDT+ANNIAY       R  IE AA  A+A EF++ +P+G DT +G
Sbjct: 429 RRHVSQVTQHVTLFNDTVANNIAYGDLAGAPRADIEAAAADAYAKEFVDRLPKGFDTEVG 488

Query: 476 ENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVI 535
           ENG  LSGGQRQR+AIARALL++AP+LILDEATSALDTESER IQAALD + + +T LVI
Sbjct: 489 ENGVLLSGGQRQRLAIARALLKNAPLLILDEATSALDTESERHIQAALDHVMQGRTTLVI 548

Query: 536 AHRLSTIEQADEILVVDEGEIIERGRHADLLAQDGAYAQLHRIQFGE 582
           AHRLSTIE+AD+ILV+D+G ++ERG H +LLA +G YA+LH +   E
Sbjct: 549 AHRLSTIEKADQILVMDQGRLVERGTHTELLAANGHYARLHAMGLDE 595