Pairwise Alignments

Query, 582 a.a., lipid A export ATP-binding/permease MsbA from Vibrio cholerae E7946 ATCC 55056

Subject, 587 a.a., putative ABC efflux transporter, permease/ATP-binding protein from Pseudomonas putida KT2440

 Score =  319 bits (818), Expect = 2e-91
 Identities = 197/571 (34%), Positives = 309/571 (54%), Gaps = 10/571 (1%)

Query: 17  WTYIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAESNFLRILPFMILGLMF 76
           W ++R Y+  ++++ +ALV+ AA    M   ++ L+D+GF    ++ L     + L L+ 
Sbjct: 17  WQFVRPYRRQVLLALLALVVTAAITLSMGQGIRLLVDQGFMTRSAHQLNQTIGLFLLLVL 76

Query: 77  VRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSEQVA 136
              +  F+  Y +SW+    V  +RR +F+H + +   FF+   +  + SR+T D+  + 
Sbjct: 77  ALAVGTFSRFYLVSWIGERCVADIRRAVFDHLIGLHPGFFEDNRSSEIQSRLTADTTLLQ 136

Query: 137 GATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKISRNM 196
                +L   +R    +IG + L+F  + +L+ +++V  P+V   I    +R R +SR  
Sbjct: 137 SVIGSSLSMFLRNALMVIGGVVLLFITNPKLTSIVVVTLPLVLAPILLFGRRVRSLSRQS 196

Query: 197 QTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQ 256
           Q  +  V S   + L   K V +Y  Q  +R+ F     +      K ++ ++    ++ 
Sbjct: 197 QDRVADVGSYVAETLGQIKTVQAYNHQAHDRELFADTVEAAFTVARKRITQRAWLITLVI 256

Query: 257 MIASLALFAVLFLASVDSIRAELTPGTFT--VVFSAMFGLMRPLKALTSVTSEFQRGMAA 314
           ++   A+  +L++  +D I   ++ G     V +S + G       L+ V  E QR   A
Sbjct: 257 VLVLGAVGVMLWVGGMDVIAGRISAGELAAFVFYSLIVG--SAFGTLSEVIGELQRAAGA 314

Query: 315 CQTLFGLMDLETE---RDNGKYEAE-RVNGEVDVKDVTFTYQGKEK-PALSHVSFSIPQG 369
            + +  L+   +     D  +   + R +G ++++ V F Y  +    A+  +S +I  G
Sbjct: 315 AERIAELLAARSAILPPDVAQVLPQPRASGHIELQQVVFAYPSRPTVAAVDGLSLTIEPG 374

Query: 370 KTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLF 429
           +TVALVG SG+GKST+ +L  RFYD   G I LDG  V D+    LRR FALV+QN  LF
Sbjct: 375 QTVALVGPSGAGKSTLFDLLLRFYDPQQGRILLDGQPVTDFDPDQLRRQFALVAQNPSLF 434

Query: 430 NDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRV 489
             T+  NI Y    E T  ++E AAR AHA EFI  +PQG  T +GE G  LSGGQRQR+
Sbjct: 435 RGTVEANIRYGRP-EATLAEVEAAARGAHADEFIRQLPQGYQTPLGEGGIGLSGGQRQRL 493

Query: 490 AIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEIL 549
           AIARALL DAP+L+LDEATSALD +SE  IQ AL  L   +T LVIAHRL+T++ A+ I 
Sbjct: 494 AIARALLVDAPILLLDEATSALDAQSEYLIQQALPSLMAGRTTLVIAHRLATVQHAERIA 553

Query: 550 VVDEGEIIERGRHADLLAQDGAYAQLHRIQF 580
           V+D+G ++  G H  L+     YA+L  +QF
Sbjct: 554 VIDQGRLVAVGTHRQLIEDSPLYARLAALQF 584