Pairwise Alignments

Query, 582 a.a., lipid A export ATP-binding/permease MsbA from Vibrio cholerae E7946 ATCC 55056

Subject, 613 a.a., ABC transporter ATP-binding protein/permease from Magnetospirillum magneticum AMB-1

 Score =  281 bits (719), Expect = 5e-80
 Identities = 178/493 (36%), Positives = 268/493 (54%), Gaps = 9/493 (1%)

Query: 92  VSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSEQVAGATSRALVSIVREGA 151
           V+   + ++   +F H   + +RF     TGG+   I   ++ +    +  L +I+    
Sbjct: 107 VAQRAIRKVGLGVFTHLHRLGLRFHLDRQTGGVSRAIERGTKGIEFLLNFMLFNILPTLL 166

Query: 152 SIIGLLTLMFWNSWQLSLVLIV---VAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAE 208
            I GL+T + W  +     LI    +A  +AF +     R  K  R M       ++ A 
Sbjct: 167 EI-GLVTAILWGLYDGVFALITAVTIAVYIAFTLGVTEWR-TKFRRAMNETDSEASTKAI 224

Query: 209 QMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQMIASLALFAVLF 268
             L   + V  +  +  E  R+DK          K     S+ +     + ++ L  V+ 
Sbjct: 225 DSLLNFETVKYFCNEAHEAGRYDKALARYEHAASKSKVTLSLLNMGQGAVIAVGLTLVMI 284

Query: 269 LASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLM--DLET 326
            A+       +T G F +V S +  L  PL  L  V  E ++ +   +++F L+  + E 
Sbjct: 285 RAAQGVADGTMTLGDFVLVNSYLIQLYLPLNFLGFVYREIKQSLTDMESMFRLLRENAEI 344

Query: 327 ERDNGKYEAERVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIA 386
           E   G        GEV  + V+F Y   ++  L  V F++P GKT+A+VG SG+GKSTI+
Sbjct: 345 EDAPGAGPLALQGGEVRFEAVSFGYN-PDRRILGGVDFTVPAGKTLAIVGPSGAGKSTIS 403

Query: 387 NLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYT 446
            L  RFYDVD G I +DG D+RD   ++LR    +V Q+  LFNDTI  NIAY   G  +
Sbjct: 404 RLLFRFYDVDEGRIVIDGADIRDVTQSSLRAAIGIVPQDTVLFNDTIRYNIAYGRPGA-S 462

Query: 447 REQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDE 506
           +++IE AAR A   +F++++PQG DT +GE G  LSGG++QRVAIAR +L+   +LI DE
Sbjct: 463 QDEIEAAARLARIDDFVQSLPQGYDTRVGERGLKLSGGEKQRVAIARTILKQPAILIFDE 522

Query: 507 ATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLL 566
           ATSALDT++E+ IQ +L E+ +N+T L++AHRLST+  ADEI+V++ G I+ERGRHA LL
Sbjct: 523 ATSALDTQTEKEIQESLREVSRNRTTLIVAHRLSTVVDADEIVVLEHGRIVERGRHARLL 582

Query: 567 AQDGAYAQLHRIQ 579
             DG YA + R Q
Sbjct: 583 EADGRYAAMWRRQ 595