Pairwise Alignments

Query, 582 a.a., lipid A export ATP-binding/permease MsbA from Vibrio cholerae E7946 ATCC 55056

Subject, 592 a.a., ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  292 bits (748), Expect = 2e-83
 Identities = 186/558 (33%), Positives = 295/558 (52%), Gaps = 10/558 (1%)

Query: 27  LVVSTIALVINAAADTYMISLLKPLLDEGFGNAESNFLRILPFMILGLMFVRGLSGFASS 86
           L +    ++I+  A   +    K L+DE   N+    L+ L   +   + V+ ++ FA +
Sbjct: 37  LFIGLFLIIISRLAGLVLPGASKYLMDEVIPNSNMQLLKWLVIAVGVAVTVQAVTSFALT 96

Query: 87  YCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSEQVAGATSRALVSI 146
             LS  + +++ ++R ++ +H + +P+RFFD   TG L+SRI  D E V       L  +
Sbjct: 97  QILSVEAQHLIAKLRAKVQSHIIKLPIRFFDNAKTGELVSRIMTDVEGVRNLVGTGLAQM 156

Query: 147 VREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSK--RFRKISRNMQTAMGHVT 204
           V    + +  L L+ + S  ++L ++V  PV+ F +  +    + R I R        VT
Sbjct: 157 VGGVLTSVICLGLLIYISPMMTLYVLV--PVIIFGLISLKAFGKIRPIFRERGKINAEVT 214

Query: 205 SSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQMIASLALF 264
               + L G +V+  +  +  E K F++    +       ++  S+      ++  LA  
Sbjct: 215 GRLAETLGGIRVIKGFNAEAQEVKTFEEGVLRLYLNIKSSLTTTSMVTSAATLLLGLASA 274

Query: 265 AVLFLASVDSIRAELTPGTFTVVFSAMFGLM-RPLKALTSVTSEFQRGMAACQTLFGLMD 323
            ++ +     +  ELT G F + F+   G M  P+  ++++ S+     A       +M+
Sbjct: 275 GIMGIGGYMIMSGELTFGDF-LAFTLYLGFMIAPIVQMSNIGSQLTEAFAGLDRTEEIMN 333

Query: 324 LETERD--NGKYEAERVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSG 381
           +  E D  +   +   + G++  + V+F Y+ + K  +  VSF  P G   ALVG SGSG
Sbjct: 334 IPLEEDEKSRNLQLPSIKGDLAFEQVSFAYE-EGKNVVKEVSFEAPAGSMTALVGTSGSG 392

Query: 382 KSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAA 441
           K+TIA L   F +   G++ +DG D++   L + R    +V Q+  LF  TI  NI +  
Sbjct: 393 KTTIAGLVASFLNPAGGTVTIDGTDLQQVSLASYRSQLGVVLQDDFLFEGTIRQNILFPR 452

Query: 442 EGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPV 501
               T EQ+ QA   AH  EF +    GLDT+IGE G  LSGGQ+QR+AIARA+L D  +
Sbjct: 453 PDART-EQLMQAVYAAHVHEFTDRFEDGLDTLIGERGVKLSGGQKQRIAIARAILADPRI 511

Query: 502 LILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGR 561
           LILDEATS LDTESE  IQ +L +L K +T  VIAHRLSTI QAD+ILVV++GEI+ERG+
Sbjct: 512 LILDEATSNLDTESETLIQESLKKLMKGRTSFVIAHRLSTIRQADQILVVEKGEIVERGQ 571

Query: 562 HADLLAQDGAYAQLHRIQ 579
           H +L+ + G Y +L+  Q
Sbjct: 572 HEELMEKRGRYFELYTYQ 589