Pairwise Alignments

Query, 582 a.a., lipid A export ATP-binding/permease MsbA from Vibrio cholerae E7946 ATCC 55056

Subject, 596 a.a., ABC-type multidrug transport system, ATPase and permease components from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  282 bits (722), Expect = 2e-80
 Identities = 172/590 (29%), Positives = 322/590 (54%), Gaps = 23/590 (3%)

Query: 8   SNWQTFKRLWTYIRLYKAGL---VVSTIALVINA----AADTYMISLLK--PLLDEGFGN 58
           S W+  K L+ Y      G+   ++S I ++I A     A  Y++       + ++G   
Sbjct: 3   SLWRLNKYLYKYKGYLLLGILFTIISNIFVMIPAQLVRVAIDYVVESFSFYQMFEQGAST 62

Query: 59  AES-----NFLRILPFMILGLMFVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPV 113
           A       +F+ +   +IL + F+RG   F     +  +S  +   ++  +F H+  +P+
Sbjct: 63  ASIRAAFLDFIFVFGVLILAMAFLRGFFLFLIRQTIIVMSRLIEYDLKNEIFAHYQQLPL 122

Query: 114 RFFDQESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTL----MFWNSWQLSL 169
            F+ + STG L++RIT D  +V      AL+     G +++ L  L    M   +  L++
Sbjct: 123 SFYRKNSTGDLMARITEDVSRVRMYFGPALMY----GINLLVLFPLVIGYMLTVNVPLTI 178

Query: 170 VLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKR 229
             ++  PV++ +I  V+    + S  +Q ++  +++  ++   G +V+ ++  +E    +
Sbjct: 179 YSLLPLPVLSISIYIVNNMINERSEKIQRSLSGLSTFVQESFSGIRVLKAFVREEDSSHK 238

Query: 230 FDKVSNSMRQQTMKLVSAQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFS 289
           F   S   +++++ L   Q++  P+I  +  ++    +++     I   +  G       
Sbjct: 239 FATASEDYKEKSISLTKVQALFFPLIMGLVGISTIITVYVGGNQVIDGTIGYGVIAEFIL 298

Query: 290 AMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERDNGKYEAERVNGEVDVKDVTF 349
            +  L  P+ +L  +TS  QR  A+   +   +D +    + ++  E ++G +  +D++F
Sbjct: 299 YVNMLTWPVTSLGWITSIVQRAAASQTRINEFLDEKNTITSDEHLTEDIHGTIKFQDISF 358

Query: 350 TYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRD 409
            Y      AL +VSFSI  G+++A++G +GSGKSTIANL  R YD  SG I +D H ++ 
Sbjct: 359 EYPDSGIKALKNVSFSIHAGESLAIIGTTGSGKSTIANLLMRMYDPVSGEIIVDDHPLKA 418

Query: 410 YKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQG 469
           Y L++LR++   V Q+V LF+D+I+NNI +  +    +E +E+AA+ A   + I + P G
Sbjct: 419 YDLSHLRKNIGYVPQDVFLFSDSISNNIGFGLD-HIPQEVVEKAAKDADVYQNIMDFPNG 477

Query: 470 LDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKN 529
            +T +GE G +LSGGQ+QRV+IARA+ +D  +L+LD+  SA+DT++E  I  AL  + + 
Sbjct: 478 FETRLGERGITLSGGQKQRVSIARAIAKDPSILLLDDCLSAVDTKTENVILNALKGIMEG 537

Query: 530 KTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQDGAYAQLHRIQ 579
           +T ++I+HR+S+ + AD+I+V+D+G+++E G H  L+A  G YA+L+  Q
Sbjct: 538 RTSIIISHRVSSAKLADKIIVLDDGKLVEEGSHETLMASKGVYAELYEKQ 587