Pairwise Alignments

Query, 582 a.a., lipid A export ATP-binding/permease MsbA from Vibrio cholerae E7946 ATCC 55056

Subject, 602 a.a., Putative multidrug export ATP-binding/permease protein from Alteromonas macleodii MIT1002

 Score =  291 bits (746), Expect = 4e-83
 Identities = 180/595 (30%), Positives = 310/595 (52%), Gaps = 27/595 (4%)

Query: 8   SNWQTFKRLWTYIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAESNFLRIL 67
           S  Q  + + +++  YKA +V + IAL   A A   +   +K  +D GF    ++ L   
Sbjct: 9   STKQVLQWIGSHLLRYKARVVGAVIALFTAAVAWLLLGQGIKYAIDSGFIENAADTLNKA 68

Query: 68  PFMILGLMFVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSR 127
             ++L +  V  L+ +A  Y ++W+   V   +R +++ H + +P  FF +  TG ++SR
Sbjct: 69  TVLVLAITIVACLATYARFYLMTWLGERVSADIRNQVYAHLLSLPPSFFAELRTGEVISR 128

Query: 128 ITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSK 187
            T D+  +      +L   +R   + +G L LM ++S  L+  +IV  P V   I  ++ 
Sbjct: 129 FTSDTTIIQTVVGMSLSMTLRSVVTFVGALALMTFSSPLLTFCVIVAVPAVLVPIKVLAP 188

Query: 188 RFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSA 247
           + R+ ++  Q  +  + +  ++ L     V +Y  +  ER  F K          K +  
Sbjct: 189 QVRRYAKESQDKVADLGARIDESLHEIMTVQAYTAENAERLHFSKKVELAMDVAKKRIHY 248

Query: 248 QSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFT--VVFSAMFGLMRPLKALTSVT 305
           +S+    I  I+  A+  + ++ +   + + +T G  +  + ++ M G    +  ++ V 
Sbjct: 249 RSLLIGCIMCISMTAIIFIAWVGARQVLDSTMTVGELSAFLFYAVMAG--GSVATISEVI 306

Query: 306 SEFQRGMAACQTLFGLM-----------DLETERDNGKYEA----------ERVNGEVDV 344
            E QRG+ A + L+ L            D      +  Y A           +   ++++
Sbjct: 307 GEVQRGVGASERLYELFTTKPSIRSLNGDTAEASASSTYSALKGASAKPIISKAAPKIEL 366

Query: 345 KDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDG 404
           ++V+F Y    KP   +++ +I  G+ +ALVG SG+GK+T+  L  RFYD  +G I  +G
Sbjct: 367 ENVSFAYPNS-KPLFDNLNINIQAGERLALVGASGAGKTTLFQLLMRFYDPSAGQILFNG 425

Query: 405 HDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIE 464
             +    +  LR+H A+V+Q   +F DT+  NI Y +    + + +  AA+QA A EFI+
Sbjct: 426 APINKMPVDVLRQHIAIVTQEPVVFADTVLENIRYGSP-HASDDAVINAAKQAFAHEFID 484

Query: 465 NMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALD 524
           N+ +  +T +GE G  LSGGQ+QR+AIARA+L D P+L+LDEATSALD  SER +Q A+D
Sbjct: 485 NLDERYNTQLGERGVKLSGGQKQRIAIARAILADRPILLLDEATSALDAMSERMVQQAID 544

Query: 525 ELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQDGAYAQLHRIQ 579
            L   KT +VIAHRL+T++ AD ILV+D+G+++  G HA L+  D  Y +   +Q
Sbjct: 545 RLMVGKTSIVIAHRLATVQHADRILVMDKGQVVGSGDHASLMKSDTLYREYAELQ 599