Pairwise Alignments

Query, 220 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 229 a.a., membrane protein from Pseudomonas simiae WCS417

 Score =  110 bits (275), Expect = 2e-29
 Identities = 61/187 (32%), Positives = 97/187 (51%)

Query: 28  WPKFRDDKSFQHLTYFVMLGLFLLWSAQASVKEGLSIHFLALTTLTMMYGWRSAFILTLP 87
           W +   D+  QHL +  +  LF+LW  +     G+S HF+ +T +T++  W  A +    
Sbjct: 32  WVELFADRRRQHLLFGTVFALFMLWLVRRDFDTGVSYHFIGMTAVTLLLDWPLAIVGGFA 91

Query: 88  VSATLALFGKISFAALPEYLLLSSLLPILISYSIFALSYHYLPRNIFVFIFVAGFFNAGV 147
               L   G+   AAL    LL   LP+L++ +   L     PRN FV+IF +GFF A +
Sbjct: 92  AQLGLMALGRQDLAALGVNGLLLIGLPVLVTEACALLVERAQPRNPFVYIFCSGFFAAAL 151

Query: 148 TGSLHLLLNSLYIWQLGAYDWITITDNYLIFVPLLAFPEGLLNGMALAILAVFRPEWLRV 207
           +  L L+L    +W  G +      ++++ ++ L+ FPE  +NGM ++ L VF PEWL  
Sbjct: 152 SALLCLVLGLGLLWFDGRFALPEWLEDFVGYLWLIIFPEAFINGMVVSALVVFCPEWLET 211

Query: 208 FSDRDYL 214
           F+   YL
Sbjct: 212 FNRTRYL 218



 Score = 23.1 bits (48), Expect = 0.005
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query: 187 GLLNGMALAILAVFRPEWLRVFSDR 211
           G L  + L + A+ R  W+ +F+DR
Sbjct: 15  GWLLYVPLVVWAILRSPWVELFADR 39