Pairwise Alignments

Query, 220 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 235 a.a., conserved membrane protein of unknown function from Pseudomonas putida KT2440

 Score =  100 bits (249), Expect = 2e-26
 Identities = 58/187 (31%), Positives = 93/187 (49%)

Query: 28  WPKFRDDKSFQHLTYFVMLGLFLLWSAQASVKEGLSIHFLALTTLTMMYGWRSAFILTLP 87
           W +   D+  QHL +  +  LF LW  +     G+S HF+ +T +T++  W  A +    
Sbjct: 40  WVELFTDRRRQHLLFGTVFCLFALWLVRRDFDTGVSYHFIGMTAVTLLLDWPLAVLGGFM 99

Query: 88  VSATLALFGKISFAALPEYLLLSSLLPILISYSIFALSYHYLPRNIFVFIFVAGFFNAGV 147
               L   G+   AAL    L+   LP+LI+     +     PRN+FV+IF +GFF A +
Sbjct: 100 AQLGLLALGRQDLAALGVNGLMLIGLPVLITEVCAIVVERAQPRNLFVYIFCSGFFPAAL 159

Query: 148 TGSLHLLLNSLYIWQLGAYDWITITDNYLIFVPLLAFPEGLLNGMALAILAVFRPEWLRV 207
           T  + +      +W  G +       +++ ++ L+ FPE  +NGM ++ L VF PEWL  
Sbjct: 160 TVLVCVPAALGVLWLDGRFALPEWLSDFVGYLWLMMFPEAFINGMVISALVVFCPEWLET 219

Query: 208 FSDRDYL 214
           F+   YL
Sbjct: 220 FNRTRYL 226



 Score = 23.9 bits (50), Expect = 0.003
 Identities = 11/25 (44%), Positives = 15/25 (60%)

Query: 187 GLLNGMALAILAVFRPEWLRVFSDR 211
           G L  + L I AV R  W+ +F+DR
Sbjct: 23  GWLGYVPLLIWAVSRVRWVELFTDR 47