Pairwise Alignments

Query, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 712 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  156 bits (394), Expect = 3e-42
 Identities = 105/366 (28%), Positives = 183/366 (50%), Gaps = 14/366 (3%)

Query: 257 SSRYQSLAEKAGEQTLLSILVACVILAVLTVLLFMMVSFSLSKALTQIGRVLEKLSSGDL 316
           S + QS  E   +  +  + +A +++A + +L+  +V   +++ L Q+  +L  ++ G+ 
Sbjct: 343 SQKLQSDLEAQRKTDIFGMTIAGLLIAGIGLLVIWLVGHGIARPLKQMVAMLNDIAQGEG 402

Query: 317 SQRLALISNKKDEFNQLAFAVNKSCENLGGL-------VHVVQDRSVALSGDAVALNQAI 369
                L S++ DE   +A   N     L G+       V  V D S   +  A+  NQ +
Sbjct: 403 DLTRRLTSDRADELGAIANGFNTFLIKLQGMITQVVSSVQKVSDSSEHTADIAIRTNQGV 462

Query: 370 DNLVRGQSDVMDQTQRLASATEEVSLTTQQVSHSLEVVANVSKASTLAAAEGSKVISAAI 429
                     M +  ++A+A  E++ T Q V+ +    A  +  +  AA++G +++    
Sbjct: 463 HKQ-------MVEIDQVATAVHEMTATAQDVARNATQAAQAASHADQAASQGMRIVRDTS 515

Query: 430 GSLREVGSILQSAASHIQQLEQASAKVDSVMDIINGIAEQTNLLALNAAIEAACAGEQGR 489
            S+  +   +  A S +Q L + S  +++++  I GIAEQTNLLALNAAIEAA AGEQGR
Sbjct: 516 TSIGALAEEIGKAVSVVQTLAKDSENINAILTAIRGIAEQTNLLALNAAIEAARAGEQGR 575

Query: 490 GFAVVADEVRSLAVRTVNAVSEISGTIETMKKESAEVILFMNQSEQTMEEGQSKGNQAMQ 549
           GFAVVADEVR+LA +T  A  EI   I+ +++ + +V+  M  S+   +E      +A +
Sbjct: 576 GFAVVADEVRNLAQKTQKATEEIQTMIQQLQQGTRDVVRVMEDSQSRTDESVQHAAKAAE 635

Query: 550 ALQRITQGTDEAASQTERIFSSIKELSATSQAMAESMSQISSAMQALESYNTQLRVTSRE 609
           AL+ ITQ          +I S+ +E SA ++ +  ++  I      +     +    S +
Sbjct: 636 ALETITQAVSVINDMNTQIASAAEEQSAVAEDINRNVINIGQVANEVAGGADESSAASAD 695

Query: 610 VETRAE 615
           +   AE
Sbjct: 696 LTKLAE 701



 Score = 29.3 bits (64), Expect = 6e-04
 Identities = 31/161 (19%), Positives = 67/161 (41%), Gaps = 35/161 (21%)

Query: 461 DIINGIAEQTNLLALNAAIEAACAGEQGRGFAVVADEVRSLAVRTVNAVSEISGTIETMK 520
           DI  G  + T  L  + A E    G    GF     +++ +  + V++V ++S + E   
Sbjct: 396 DIAQGEGDLTRRLTSDRADEL---GAIANGFNTFLIKLQGMITQVVSSVQKVSDSSE--- 449

Query: 521 KESAEVILFMNQSEQTMEEGQSKGNQAMQALQRITQGTDEAASQTERIFSSIKELSATSQ 580
             +A++ +                        R  QG  +   + +++ +++ E++AT+Q
Sbjct: 450 -HTADIAI------------------------RTNQGVHKQMVEIDQVATAVHEMTATAQ 484

Query: 581 AMAESMSQISSAMQALESYNTQ----LRVTSREVETRAESL 617
            +A + +Q + A    +   +Q    +R TS  +   AE +
Sbjct: 485 DVARNATQAAQAASHADQAASQGMRIVRDTSTSIGALAEEI 525