Pairwise Alignments

Query, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 715 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  155 bits (392), Expect = 6e-42
 Identities = 107/330 (32%), Positives = 179/330 (54%), Gaps = 5/330 (1%)

Query: 280 VILAVLTVLLFMMVSFSLSKALTQIGRVLEKLSSG--DLSQRLALISNKKDEFNQLAFAV 337
           ++ AV+ ++L  +++ S+++ +  +  +LE ++SG  DL++RLA   +K+DE  QLA   
Sbjct: 369 LLAAVVGLILVWLMARSVTRPILGVAHMLEDIASGEGDLTRRLAY--DKQDELGQLAGWF 426

Query: 338 NKSCENLGGLVHVVQDRSVALSGDAVALNQAIDNLVRGQSDVMDQTQRLASATEEVSLTT 397
           N+  + L  ++  V+       G A            G      Q  ++A+A+ E+S T 
Sbjct: 427 NRFLDKLQPIIAEVKRSVQDARGTADQSAAIATQTSAGMEQQYRQVDQVATASHEMSATA 486

Query: 398 QQVSHSLEVVANVSKASTLAAAEGSKVISAAIGSLREVGSILQSAASHIQQLEQASAKVD 457
           Q V+ S    A  ++ +  A  +G  VI     ++  + S + +A + ++ L   S K+ 
Sbjct: 487 QDVARSAAQAAQAARDADQATRDGLTVIEHTTHNIGALASDMSTAMTQVEGLAANSEKIG 546

Query: 458 SVMDIINGIAEQTNLLALNAAIEAACAGEQGRGFAVVADEVRSLAVRTVNAVSEISGTIE 517
           SV+++I GIAEQTNLLALNAAIEAA AGE GRGFAVVADEVR+LA RT  +V E    IE
Sbjct: 547 SVLEVIRGIAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRNLAQRTQESVEETRLVIE 606

Query: 518 TMKKESAEVILFMNQSEQTMEEGQSKGNQAMQALQRITQGTDEAASQTERIFSSIKELSA 577
            ++  +  V+  M  S +  +    +  QA+ AL++I       +    +I S+ +E SA
Sbjct: 607 HLQNGTEAVVGSMGNSYRQAQGSVEQVGQAVTALRQIGDAVTVISDMNLQIASAAEEQSA 666

Query: 578 TSQAMAESMSQISSAMQAL-ESYNTQLRVT 606
            ++ +  +++ I    ++L E  N   RV+
Sbjct: 667 VAEEINNNVATIRDVTESLSEQANESARVS 696



 Score = 26.2 bits (56), Expect = 0.005
 Identities = 35/135 (25%), Positives = 56/135 (41%), Gaps = 14/135 (10%)

Query: 1   MDVTQLSQKQKITLFILVLCLGFIGLAVFTAQSLSKMNSQYQQSGDVTAGSAALFATQAQ 60
           M + QLS + KITL   +  LG + L V    SL +M    QQ          + A+  Q
Sbjct: 1   MSLRQLSIQWKITLLAGLCLLGIVTLLV--GLSLYRMEQSSQQ----------VKASSMQ 48

Query: 61  LFELAAEREHLSSNKVSEIKTRLAQLMQKVEGDKRFLAENNFANEGNALQQAVQAFNDDM 120
           + + AA+    +  +V  +  R  Q M   +    F  +  F  E  A ++ + AF+   
Sbjct: 49  MLDEAAQARIEAQGEVQALGIR-RQFMDAYQYGHGFSRQVLFLRE-QAEKRFLDAFDTRE 106

Query: 121 QPWLEIKGELGFNVD 135
               ++K  L  N D
Sbjct: 107 DLTRQVKAALQANPD 121



 Score = 25.8 bits (55), Expect = 0.007
 Identities = 18/83 (21%), Positives = 42/83 (50%), Gaps = 9/83 (10%)

Query: 300 ALTQIGRVLEKLSSGDLSQRLALISNKKDEFNQLAFAVNKSCENLGGLVHVVQDRSVALS 359
           AL QIG  +  +S  +L      I++  +E + +A  +N +   +  +   + +++    
Sbjct: 639 ALRQIGDAVTVISDMNLQ-----IASAAEEQSAVAEEINNNVATIRDVTESLSEQA---- 689

Query: 360 GDAVALNQAIDNLVRGQSDVMDQ 382
            ++  ++QA+++L   Q  +MDQ
Sbjct: 690 NESARVSQALNSLANQQQGLMDQ 712