Pairwise Alignments

Query, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 624 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  158 bits (400), Expect = 6e-43
 Identities = 100/333 (30%), Positives = 187/333 (56%), Gaps = 8/333 (2%)

Query: 261 QSLAEKAGEQTLLSILVACVILAVLTVLLFMMVSFSLSKALTQIGRVLEKLSSG--DLSQ 318
           + +A  A ++   S L+  VI  V++V + + +   L K L  +   ++ ++SG  DL+Q
Sbjct: 259 EEIAYAALDELRRSTLIFTVIALVISVFVLLFIVRVLMKPLDTLNDAIQNVASGEGDLTQ 318

Query: 319 RLALISNKKDEFNQLAFAVNKSCENLGGLVHVVQDRSVA--LSGDAVALNQAIDNLVRGQ 376
           RL+  +N  +EF +LA   N   E L     ++Q +++   +   + + +  +       
Sbjct: 319 RLS--TNTDEEFAKLAIGFNTFTETLQK--QLIQSKAIGAEILRGSESTSMTLQQSAEAM 374

Query: 377 SDVMDQTQRLASATEEVSLTTQQVSHSLEVVANVSKASTLAAAEGSKVISAAIGSLREVG 436
              + + ++LA+A  E++ T+  V+++ +  A+ +K +  AAA G+ V++    ++  + 
Sbjct: 375 RSQLHELEQLATAMHEMATTSSDVANNAQGAASAAKVADDAAAAGTDVVTKTTKAIDTLS 434

Query: 437 SILQSAASHIQQLEQASAKVDSVMDIINGIAEQTNLLALNAAIEAACAGEQGRGFAVVAD 496
           + + +A   ++ LE A+A +++V+ +IN IA+QTNLLALNAAIEAA AGE GRGFAVVAD
Sbjct: 435 ATIDAAVDDVKVLESATANIETVLKVINDIADQTNLLALNAAIEAARAGESGRGFAVVAD 494

Query: 497 EVRSLAVRTVNAVSEISGTIETMKKESAEVILFMNQSEQTMEEGQSKGNQAMQALQRITQ 556
           EVR+LA RT  + +EI   IE ++  +  V + M+ S+ T     ++   A +AL++I  
Sbjct: 495 EVRTLAQRTQQSTTEIRNMIEKLQSGANAVAVAMSHSKDTAASAVNQAQGANEALEKIRL 554

Query: 557 GTDEAASQTERIFSSIKELSATSQAMAESMSQI 589
              + +    +I S+ +E S  ++ +  +  +I
Sbjct: 555 AIQQISDMNIQIASAAEEQSLVAEEINNNTVKI 587



 Score = 45.8 bits (107), Expect = 6e-09
 Identities = 61/352 (17%), Positives = 135/352 (38%), Gaps = 48/352 (13%)

Query: 109 LQQAVQAFNDDMQPWLEIKGELGFNVDDGKLAELKKLAVTIEKKIDETGMVTINSDFQAM 168
           L + +   ND +Q     +G+L   +      E  KLA+                 F   
Sbjct: 295 LMKPLDTLNDAIQNVASGEGDLTQRLSTNTDEEFAKLAI----------------GFNTF 338

Query: 169 IKAQQNYLLQPNEQNLRLFNRALAGFVSMSQSYAMLDLYKAEIEQFKTTFLRVSELSQQV 228
            +  Q  L+Q       +   + +  +++ QS   +     E+EQ  T    ++  S  V
Sbjct: 339 TETLQKQLIQSKAIGAEILRGSESTSMTLQQSAEAMRSQLHELEQLATAMHEMATTSSDV 398

Query: 229 KDIEKNLLSS-----EATAQG--VIESTAQRLEEVSSRYQSLAEKAGEQTLLSILVACVI 281
            +  +   S+     +A A G  V+  T + ++ +S+   +  +         + V    
Sbjct: 399 ANNAQGAASAAKVADDAAAAGTDVVTKTTKAIDTLSATIDAAVD--------DVKVLESA 450

Query: 282 LAVLTVLLFMMVSFSLSKALTQIGRVLEKLSSGDLSQRLALISNKKDEFNQLAFAVNKSC 341
            A +  +L ++   +    L  +   +E   +G+  +  A+++   DE   LA    +S 
Sbjct: 451 TANIETVLKVINDIADQTNLLALNAAIEAARAGESGRGFAVVA---DEVRTLAQRTQQST 507

Query: 342 ENLGGLVHVVQ--------------DRSVALSGDAVALNQAIDNLVRGQSDVMDQTQRLA 387
             +  ++  +Q              D + +    A   N+A++ +      + D   ++A
Sbjct: 508 TEIRNMIEKLQSGANAVAVAMSHSKDTAASAVNQAQGANEALEKIRLAIQQISDMNIQIA 567

Query: 388 SATEEVSLTTQQVSHSLEVVANVSKASTLAAAEGSKVISAAIGSLREVGSIL 439
           SA EE SL  ++++++   + ++S     +A E +  +     ++RE  +IL
Sbjct: 568 SAAEEQSLVAEEINNNTVKIKDLSDQVAESADEANMSMQIQTENIREQDAIL 619