Pairwise Alignments

Query, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 714 a.a., Methyl-accepting chemotaxis transducer from Pseudomonas putida KT2440

 Score =  162 bits (411), Expect = 4e-44
 Identities = 111/346 (32%), Positives = 183/346 (52%), Gaps = 5/346 (1%)

Query: 271 TLLSILVACVILAVLTVLLFMMVSFSLSKALTQIGRVLEKLSSG--DLSQRLALISNKKD 328
           TLL + +  +  A++ +LL  +++  +++ +  +  +L+ ++SG  DL++RL     K+D
Sbjct: 360 TLLELSLG-LAAAIVGLLLVWLMARGVTRPILGVAAMLKDIASGEGDLTRRLTY--QKQD 416

Query: 329 EFNQLAFAVNKSCENLGGLVHVVQDRSVALSGDAVALNQAIDNLVRGQSDVMDQTQRLAS 388
           E  +LA   N+  + L   +  V+    A  G A   +        G      Q  ++A+
Sbjct: 417 ELGELAGWFNRFLDKLQPTIAEVKRSVQAARGTADQSSAIATETSAGMEQQYRQVDQVAT 476

Query: 389 ATEEVSLTTQQVSHSLEVVANVSKASTLAAAEGSKVISAAIGSLREVGSILQSAASHIQQ 448
           A+ E+S T Q V+ S    A  ++ +  A  EG  VI     S+  + + +    + I+ 
Sbjct: 477 ASHEMSATAQDVARSAAQAAQAARDADQATREGLAVIDRTTSSIGALAANMSDTMAEIEG 536

Query: 449 LEQASAKVDSVMDIINGIAEQTNLLALNAAIEAACAGEQGRGFAVVADEVRSLAVRTVNA 508
           L Q S K+ SV+++I  IAEQTNLLALNAAIEAA AGE GRGFAVVADEVR+LA RT  +
Sbjct: 537 LAQNSEKIGSVLEVIRSIAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRNLAQRTQES 596

Query: 509 VSEISGTIETMKKESAEVILFMNQSEQTMEEGQSKGNQAMQALQRITQGTDEAASQTERI 568
           V E    IE ++  + EV+  M+ S +  + G  +  QA+ ALQRI Q          +I
Sbjct: 597 VEETRQVIEALQNGTREVVGAMDHSHRQAQGGVEQVGQAVTALQRIGQAVTVITDMNLQI 656

Query: 569 FSSIKELSATSQAMAESMSQISSAMQALESYNTQLRVTSREVETRA 614
            S+ +E SA ++ +  +++ I    ++L     +    S+ + + A
Sbjct: 657 ASAAEEQSAVAEEINSNVATIRDVTESLSGQANESARVSQSLNSLA 702



 Score = 37.0 bits (84), Expect = 3e-06
 Identities = 67/312 (21%), Positives = 122/312 (39%), Gaps = 61/312 (19%)

Query: 302 TQIGRVLEKLSSGDLS-----QRLALISNKKDEFNQLAFAVNKSCENLGGLVHVVQDRSV 356
           T+   ++ KL+ G L+     QRL +++         AF      +  G L+ V ++   
Sbjct: 292 TKGAELVRKLADGKLTTLHDRQRLKVLA---------AFRPIPDAQPWGVLLDVPEN--- 339

Query: 357 ALSGDAVALNQAIDNLVRGQSDVMDQTQRLASATEE---VSLTTQQVSHSLEVVANVSKA 413
           AL+G A  L Q +D L      +++ +  LA+A      V L  + V+  +  VA + K 
Sbjct: 340 ALTGPAETLKQELDAL-NTSGTLLELSLGLAAAIVGLLLVWLMARGVTRPILGVAAMLK- 397

Query: 414 STLAAAEGSKVISAAIGSLREVGSILQSAASHIQQLEQASAKVDSVMDIINGIAEQTNLL 473
             +A+ EG            E+G +       + +L+   A+V   +    G A+Q++ +
Sbjct: 398 -DIASGEGDLTRRLTYQKQDELGELAGWFNRFLDKLQPTIAEVKRSVQAARGTADQSSAI 456

Query: 474 ALNAAIEAACAGEQGRGFAVVADEVRSLAVRTVNAVSEISGTIETMKKESAEVILFMNQS 533
           A                                   +E S  +E   ++  +V    ++ 
Sbjct: 457 A-----------------------------------TETSAGMEQQYRQVDQVATASHEM 481

Query: 534 EQTMEEGQSKGNQAMQALQRITQGTDEAASQTERIFSSIKELSATSQAMAESMSQISSAM 593
             T ++      QA QA +   Q T E  +  +R  SSI  L+A    M+++M++I    
Sbjct: 482 SATAQDVARSAAQAAQAARDADQATREGLAVIDRTTSSIGALAAN---MSDTMAEIEGLA 538

Query: 594 QALESYNTQLRV 605
           Q  E   + L V
Sbjct: 539 QNSEKIGSVLEV 550