Pairwise Alignments

Query, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 712 a.a., methyl-accepting chemotaxis protein from Pseudomonas fluorescens SBW25

 Score =  151 bits (381), Expect = 1e-40
 Identities = 101/362 (27%), Positives = 181/362 (50%), Gaps = 14/362 (3%)

Query: 261 QSLAEKAGEQTLLSILVACVILAVLTVLLFMMVSFSLSKALTQIGRVLEKLSSGDLSQRL 320
           QS  +   +  ++ + +A +++A + +L+  +V   +++ L Q+  +L  ++ G+     
Sbjct: 347 QSDLDAQRKADIVGMAIAGLLIAGIGLLVIWLVGHGIARPLKQMVAMLNDIAQGEGDLTR 406

Query: 321 ALISNKKDEFNQLAFAVNKSCENLGGL-------VHVVQDRSVALSGDAVALNQAIDNLV 373
            L S++ DE   +A   N     L G+       V  V D S   +  A+  NQ +    
Sbjct: 407 RLTSDRADELGAIANGFNTFLIKLQGMITQVVSSVQKVSDSSEHTADIAIRTNQGVHKQ- 465

Query: 374 RGQSDVMDQTQRLASATEEVSLTTQQVSHSLEVVANVSKASTLAAAEGSKVISAAIGSLR 433
                 M +  ++A+A  E++ T Q V+ +    A  +  +  AA++G +++     S+ 
Sbjct: 466 ------MVEIDQVATAVHEMTATAQDVARNATQAAQAASHADQAASQGMRIVRDTSTSIG 519

Query: 434 EVGSILQSAASHIQQLEQASAKVDSVMDIINGIAEQTNLLALNAAIEAACAGEQGRGFAV 493
            +   +  A   +Q L + S  +++++  I GIAEQTNLLALNAAIEAA AGEQGRGFAV
Sbjct: 520 ALAEEIGKAVGVVQTLAKDSENINAILTAIRGIAEQTNLLALNAAIEAARAGEQGRGFAV 579

Query: 494 VADEVRSLAVRTVNAVSEISGTIETMKKESAEVILFMNQSEQTMEEGQSKGNQAMQALQR 553
           VADEVR+LA +T  A  EI   I+ +++ + +V+  M  S+   +E      +A +AL+ 
Sbjct: 580 VADEVRNLAQKTQKATEEIQAMIQQLQQGTRDVVRVMEDSQSRTDESVQHAAKAAEALET 639

Query: 554 ITQGTDEAASQTERIFSSIKELSATSQAMAESMSQISSAMQALESYNTQLRVTSREVETR 613
           I+Q          +I S+ +E SA ++ +  ++  I      +     +    S ++   
Sbjct: 640 ISQAVSVINDMNTQIASAAEEQSAVAEDINRNVINIGQVANEVAGGADESSAASADLTKL 699

Query: 614 AE 615
           AE
Sbjct: 700 AE 701



 Score = 30.0 bits (66), Expect = 4e-04
 Identities = 42/212 (19%), Positives = 88/212 (41%), Gaps = 42/212 (19%)

Query: 414 STLAAAEGSKVISAAIGSL--REVGSILQSAASH--IQQLEQASAKVDSVMDIINGIAEQ 469
           S L A   + ++  AI  L    +G ++     H   + L+Q  A ++   DI  G  + 
Sbjct: 348 SDLDAQRKADIVGMAIAGLLIAGIGLLVIWLVGHGIARPLKQMVAMLN---DIAQGEGDL 404

Query: 470 TNLLALNAAIEAACAGEQGRGFAVVADEVRSLAVRTVNAVSEISGTIETMKKESAEVILF 529
           T  L  + A E    G    GF     +++ +  + V++V ++S + E     +A++ + 
Sbjct: 405 TRRLTSDRADEL---GAIANGFNTFLIKLQGMITQVVSSVQKVSDSSE----HTADIAI- 456

Query: 530 MNQSEQTMEEGQSKGNQAMQALQRITQGTDEAASQTERIFSSIKELSATSQAMAESMSQI 589
                                  R  QG  +   + +++ +++ E++AT+Q +A + +Q 
Sbjct: 457 -----------------------RTNQGVHKQMVEIDQVATAVHEMTATAQDVARNATQA 493

Query: 590 SSAMQALESYNTQ----LRVTSREVETRAESL 617
           + A    +   +Q    +R TS  +   AE +
Sbjct: 494 AQAASHADQAASQGMRIVRDTSTSIGALAEEI 525