Pairwise Alignments

Query, 260 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 261 a.a., lysine / arginine / ornithine ABC transporter - periplasmic binding protein from Pseudomonas putida KT2440

 Score =  244 bits (622), Expect = 2e-69
 Identities = 121/258 (46%), Positives = 177/258 (68%), Gaps = 2/258 (0%)

Query: 3   MKKWLVATALIATTISGVTQAKEWKTVRFGIEGAYPPFSWTEADGSLKGFDVDMANALCA 62
           MKK  +  AL  +  S V+QA E K ++ GIE AYPPF++ + DGS+ GFD D+ NALC 
Sbjct: 1   MKKLALLGALALSVFSLVSQAAE-KPLKIGIEAAYPPFAFKQPDGSIAGFDYDIGNALCE 59

Query: 63  EMQVECKIVPQDWDGIIPSLLARKYDAIIAAMSITEERKKKVDFTGKYAQIPNKFIAKKG 122
           EM+ +C  V Q++DG+IP+L  RK DAI+++MSIT++RKK VDFT +Y   P + + K G
Sbjct: 60  EMKTKCTWVEQEFDGLIPALKVRKIDAILSSMSITDDRKKSVDFTKRYYLTPARLVMKDG 119

Query: 123 ADLAFTKEGLKGVKIGVQRATTHDKYITDNYG-DTVDIVRYGSFDEAYLDLANGRIAAVL 181
             ++ + + LKG KIGVQR + HD++  +  G     +V YG+ +E YLD+A GR+   +
Sbjct: 120 TTVSDSLDELKGKKIGVQRGSIHDRFAKEVLGAKGATVVPYGTQNEIYLDVAAGRLDGTV 179

Query: 182 GDASALEEGMLNKPGGDAYEFVGPSLTDPKWFGEGMGIAVRKQDKELTEKLDAAITALRE 241
            DA+ LE+G L    G  + FVGP+ TD K+FG+G+GIAVRK DK   ++++AAI A+R 
Sbjct: 180 ADATLLEDGFLKTDAGKGFAFVGPAFTDAKYFGDGIGIAVRKGDKANVDRINAAIDAIRA 239

Query: 242 KGIYQQIQAKYFKYDVYG 259
            G Y++I++KYF +D+YG
Sbjct: 240 NGKYKEIESKYFNFDIYG 257