Pairwise Alignments

Query, 260 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 243 a.a., lysine-arginine-ornithine-binding periplasmic protein from Enterobacter asburiae PDN3

 Score =  193 bits (490), Expect = 3e-54
 Identities = 109/252 (43%), Positives = 152/252 (60%), Gaps = 12/252 (4%)

Query: 3   MKKWLVATALIATTISGVTQAKEWKTVRFGIEGAYPPFSWTEADGSLKGFDVDMANALCA 62
           MKK LV  AL+AT  +G + A +   + FG+   YPPF   +A   + GFD+D+A ALC 
Sbjct: 1   MKK-LVLAALLATFAAGASAADK---INFGVSATYPPFESLDASNQIVGFDIDLAKALCK 56

Query: 63  EMQVECKIVPQDWDGIIPSLLARKYDAIIAAMSITEERKKKVDFTGKYAQIPNKFIAKKG 122
           +MQ +C      +D +IPSL  +KYDA+I+ M IT ER K+V FT  Y       IAKKG
Sbjct: 57  QMQADCTFTNHAFDSLIPSLKFKKYDAVISGMDITPERSKQVAFTDPYYANSAVVIAKKG 116

Query: 123 ADLAFTKEGLKGVKIGVQRATTHDKYITDNYGDTVDIVRYGSFDEAYLDLANGRIAAVLG 182
           A  +F  + LKG +IG++  TTH KY+ D + + V  V Y S+  A +DL NGRI  V G
Sbjct: 117 AYTSF--DQLKGKRIGMENGTTHQKYLQDKHPE-VKTVAYDSYQNAIIDLKNGRIDGVFG 173

Query: 183 DASALEEGMLNKPG-GDAYEFVGPSLTDPKWFGEGMGIAVRKQDKELTEKLDAAITALRE 241
           D + + E +   P  G A E     +TDP++FG G+GIAVR  +K L EKL+ A+ A++ 
Sbjct: 174 DTAVVNEWLKTNPQLGTATE----KVTDPQYFGTGLGIAVRPDNKALLEKLNGALKAIKA 229

Query: 242 KGIYQQIQAKYF 253
            G YQ+I  ++F
Sbjct: 230 DGTYQKISEQWF 241