Pairwise Alignments

Query, 260 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 243 a.a., lysine-arginine-ornithine-binding periplasmic protein from Enterobacter asburiae PDN3

 Score =  183 bits (465), Expect = 3e-51
 Identities = 106/253 (41%), Positives = 148/253 (58%), Gaps = 12/253 (4%)

Query: 3   MKKWLVATALIATTISGVTQAKEWKTVRFGIEGAYPPFSWTEADGSLKGFDVDMANALCA 62
           MKK L+A  L   T+S        +T+RF  E +YPPF   +A+  + GFDVD+ANALC 
Sbjct: 1   MKKVLLAVLLAGVTLSATAA----QTIRFATEASYPPFESIDANNKIVGFDVDLANALCK 56

Query: 63  EMQVECKIVPQDWDGIIPSLLARKYDAIIAAMSITEERKKKVDFTGKYAQIPNKFIAKKG 122
           E+   C    Q +D +IPSL  R+ DA++A M IT ER+K+V FT  Y      FI +KG
Sbjct: 57  EIDATCTFSNQAFDSLIPSLKFRRIDAVMAGMDITPEREKQVLFTTPYYDNSALFIGQKG 116

Query: 123 ADLAFTK-EGLKGVKIGVQRATTHDKYITDNYGDTVDIVRYGSFDEAYLDLANGRIAAVL 181
               FT  + LKG K+GVQ  TTH K+I D + + +  V Y S+  A LDL NGRI  V 
Sbjct: 117 ---KFTSVDQLKGKKVGVQNGTTHQKFIMDKHPE-ITTVPYDSYQNAKLDLQNGRIDGVF 172

Query: 182 GDASALEEGMLNKPGGDAYEFVGPSLTDPKWFGEGMGIAVRKQDKELTEKLDAAITALRE 241
           GD + + E +      D    VG  +TD  +FG G+GIAVR+ + EL +K +AA+  +++
Sbjct: 173 GDTAVVTEWL---KANDKLAPVGDKVTDKDYFGTGLGIAVRQGNTELQQKFNAALEKVKK 229

Query: 242 KGIYQQIQAKYFK 254
            G Y+ I  K+F+
Sbjct: 230 DGTYETIYKKWFQ 242