Pairwise Alignments

Query, 260 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 260 a.a., lysine-arginine-ornithine-binding periplasmic protein from Enterobacter asburiae PDN3

 Score =  198 bits (503), Expect = 1e-55
 Identities = 105/260 (40%), Positives = 156/260 (60%), Gaps = 2/260 (0%)

Query: 3   MKKWLVATAL-IATTISGVTQAKEWKTVRFGIEGAYPPFSWTEADGSLKGFDVDMANALC 61
           MKK ++A +L +  + +  + A   +TVR G +  Y PFS  +A G   GFD+D+ N +C
Sbjct: 1   MKKTVLALSLLVGLSAAAGSYAALPQTVRIGTDATYAPFSSKDAKGDFVGFDIDLGNEMC 60

Query: 62  AEMQVECKIVPQDWDGIIPSLLARKYDAIIAAMSITEERKKKVDFTGKYAQIPNKFIAKK 121
             + V+C  V  D+D +IPSL A+K DAII+++SITE+R++++ F+ K     ++ IA K
Sbjct: 61  KRIAVKCTWVGSDFDALIPSLKAKKIDAIISSLSITEKRQQEIAFSDKLYAADSRLIAPK 120

Query: 122 GADLAFTKEGLKGVKIGVQRATTHDKYITDNYGDT-VDIVRYGSFDEAYLDLANGRIAAV 180
           G+ +  T + LKG  +GV + +T + Y    + +  VD+V Y + D  Y DLA GR+ A 
Sbjct: 121 GSPIKPTIDSLKGKHVGVLQGSTQEGYANATWREKGVDVVAYQNQDLIYSDLAAGRLDAA 180

Query: 181 LGDASALEEGMLNKPGGDAYEFVGPSLTDPKWFGEGMGIAVRKQDKELTEKLDAAITALR 240
             D  A  EG L +P G  Y F GPS+ D K+FG+G GI +RK D EL    D A   LR
Sbjct: 181 FQDEVAASEGFLKQPAGKDYAFAGPSVKDKKYFGDGTGIGLRKDDTELKAAFDKAFAELR 240

Query: 241 EKGIYQQIQAKYFKYDVYGE 260
           + G Y ++  KYF ++VYGE
Sbjct: 241 KDGTYDKLAKKYFDFNVYGE 260