Pairwise Alignments

Query, 260 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 257 a.a., ABC transporter, substrate binding protein (amino acid) from Agrobacterium fabrum C58

 Score =  209 bits (532), Expect = 5e-59
 Identities = 119/262 (45%), Positives = 158/262 (60%), Gaps = 7/262 (2%)

Query: 1   MDMKKWLVATALIA--TTISGVTQAKEWKTVRFGIEGAYPPFSWTEADGSLKGFDVDMAN 58
           M +   L+A   IA  + +SG   A++   +  G EGAYPPF+  EADG+L GFD+D+A 
Sbjct: 1   MPISTRLLAAVSIAAISLLSGAALAQD--KIVIGTEGAYPPFNNLEADGTLTGFDIDIAK 58

Query: 59  ALCAEMQVECKIVPQDWDGIIPSLLARKYDAIIAAMSITEERKKKVDFTGKYAQIPNKFI 118
           ALC +M+ EC  V  DWDGIIP+L A+K+DAIIA+MSIT ER +KVDF+ KY   P    
Sbjct: 59  ALCEQMKAECTFVTNDWDGIIPALQAKKFDAIIASMSITPERLQKVDFSKKYYNTPPAIA 118

Query: 119 AKKGADLAFTKEGLKGVKIGVQRATTHDKYITDNYGDTVDIVRYGSFDEAYLDLANGRIA 178
             K + +  + + LKG  +G Q +TTH  Y   ++ D  D+  Y + DE  LD+ANGRI 
Sbjct: 119 VPKDSPIK-SIDDLKGKSLGAQGSTTHSNYAEKHFPD-ADVKMYPTADEYKLDIANGRID 176

Query: 179 AVLGDASALEEGMLNKPGGDAYEFVGPSLTDPKWFGEGMGIAVRKQDKELTEKLDAAITA 238
           AV+ D   L E  L    G   + + P   DP+  G G GIAVRK D  L +K  AAI  
Sbjct: 177 AVIDDIVVLSE-WLKTDAGKCCKILTPLKVDPEINGNGAGIAVRKGDTALADKFTAAIAG 235

Query: 239 LREKGIYQQIQAKYFKYDVYGE 260
           +R  G YQ+I  KYF +DVYG+
Sbjct: 236 IRASGKYQEINKKYFDFDVYGD 257