Pairwise Alignments

Query, 246 a.a., ABC transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 233 a.a., amino acid ABC transporter permease from Pseudomonas simiae WCS417

 Score =  214 bits (545), Expect = 1e-60
 Identities = 111/242 (45%), Positives = 160/242 (66%), Gaps = 20/242 (8%)

Query: 2   LDLQGYEASILKGALLTIEVAVLSLLLAMLLGMLGALAKMAPYRWARAIATLYTTIIRGI 61
           L+L GY   + +GA +T+++A L+L L++ LG++ A AK++  +W R  ATLYTT+IR +
Sbjct: 5   LNLHGYGPMLAQGAWMTLKLAFLALALSLALGLIAAAAKLSSAKWLRVPATLYTTLIRSV 64

Query: 62  PDLVLMMLIFFGGQILLNNGLSWFNEFINQWLTARDPNHEWVAYLPDYVDISPFVAGVLT 121
           PDLVL++LIF+  Q+ LN+    F                W     DY +I PF AGV+T
Sbjct: 65  PDLVLILLIFYSLQLWLNDLSEVFG---------------W-----DYFEIDPFTAGVIT 104

Query: 122 IGFIFGAYMAETFRGAILAVDKGELEAAKAYGMSAAMSFRRILLPQMIRHAIPGFGNNWL 181
           +GFI+GAY  E FRGAIL+V  G+LEAA AYG+S    F  +L PQ++R A+PG GNNWL
Sbjct: 105 LGFIYGAYFTENFRGAILSVPVGQLEAATAYGLSRWQRFHLVLFPQLMRFALPGLGNNWL 164

Query: 182 VLLKTTALVSIIGLEDMVRISSLAAGSTKMPFTFYMAVAIIFLFFTSVSTGLLKLLERKF 241
           VLLK+TALVSIIGL D+V+ +  A  +T  P  F +   +++L  T++S  +LK LER++
Sbjct: 165 VLLKSTALVSIIGLSDLVKAAQNAGKTTNEPLYFLILAGLMYLVITTLSNRVLKRLERRY 224

Query: 242 SI 243
           ++
Sbjct: 225 NL 226