Pairwise Alignments

Query, 246 a.a., ABC transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 222 a.a., ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

 Score =  124 bits (312), Expect = 1e-33
 Identities = 72/232 (31%), Positives = 121/232 (52%), Gaps = 34/232 (14%)

Query: 11  ILKGALLTIEVAVLSLLLAMLLGMLGALAKMAPYR-WARAIATLYTTIIRGIPDLVLMML 69
           +L+GAL+T+E+   +L L  +LG+L  + ++ P R W     T Y   IRG P LV + +
Sbjct: 15  LLRGALVTVEITACALALGCVLGLLVGIGRLNPKRRWIYGACTAYVAAIRGTPLLVQLFI 74

Query: 70  IFFGGQILLNNGLSWFNEFINQWLTARDPNHEWVAYLPDYVDISP-FVAGVLTIGFIFGA 128
           +FFG                                LP +  + P F+ GVL +G   GA
Sbjct: 75  LFFG--------------------------------LPHFGILLPAFLCGVLGLGVYSGA 102

Query: 129 YMAETFRGAILAVDKGELEAAKAYGMSAAMSFRRILLPQMIRHAIPGFGNNWLVLLKTTA 188
           Y++E  RGAI ++DKG+  AA++ GM+  ++ R+I+LPQ +   IP  GN ++ L+K +A
Sbjct: 103 YVSEIVRGAIQSIDKGQTMAAQSLGMTPGVAMRQIVLPQAVVRMIPPLGNEFIALIKNSA 162

Query: 189 LVSIIGLEDMVRISSLAAGSTKMPFTFYMAVAIIFLFFTSVSTGLLKLLERK 240
           LVS++ + D++         +      Y+A+A+++   T   T +L+  E+K
Sbjct: 163 LVSLLTIHDVMHEGQKIISVSYRSLEVYLAIAVVYFVLTGTMTLILRHFEQK 214