Pairwise Alignments

Query, 246 a.a., ABC transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 223 a.a., ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

 Score =  135 bits (339), Expect = 9e-37
 Identities = 81/239 (33%), Positives = 130/239 (54%), Gaps = 33/239 (13%)

Query: 5   QGYEASILKGALLTIEVAVLSLLLAMLLGMLGALAKMAPYRWARAIATLYTTIIRGIPDL 64
           Q +   +L+GA++T++V VL+ LL+  LG+  AL K++P R      ++   +IRG+P +
Sbjct: 11  QDFLPILLQGAVVTVQVTVLAFLLSSALGLALALMKLSPVRALSWAGSVIVNVIRGLPII 70

Query: 65  VLMMLIFFGGQILLNNGLSWFNEFINQWLTARDPNHEWVAYLPDY-VDISPFVAGVLTIG 123
           V +  I+F                                 LP++ V ++ F AGV+ +G
Sbjct: 71  VQLFYIYF--------------------------------VLPEFGVQLTAFQAGVIGLG 98

Query: 124 FIFGAYMAETFRGAILAVDKGELEAAKAYGMSAAMSFRRILLPQMIRHAIPGFGNNWLVL 183
             + AY AE FR  I AVD G+ EAA+A GM +A+  RR++LPQ  R A+P +GN  +++
Sbjct: 99  IAYSAYQAENFRAGIEAVDPGQREAAQAMGMRSALIMRRVILPQAFRIALPPYGNTLVMM 158

Query: 184 LKTTALVSIIGLEDMVRISSLAAGSTKMPFTFYMAVAIIFLFFTSVSTGLLKLLERKFS 242
           LK ++LVS I + +M R   L A ST    T Y  VA+++L  +      L+ LE++F+
Sbjct: 159 LKDSSLVSTITVAEMTRAGQLIASSTFQNMTVYTLVALLYLLMSLPLVYGLRRLEKRFA 217