Pairwise Alignments

Query, 246 a.a., ABC transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 229 a.a., histidine / lysine / arginine / ornithine ABC transporter - permease subunit from Pseudomonas putida KT2440

 Score =  233 bits (593), Expect = 3e-66
 Identities = 118/240 (49%), Positives = 165/240 (68%), Gaps = 19/240 (7%)

Query: 4   LQGYEASILKGALLTIEVAVLSLLLAMLLGMLGALAKMAPYRWARAIATLYTTIIRGIPD 63
           L+GY A IL GA LT+++A+ S+ LA++LG++G   +++P RW   +  LY+T+IRGIPD
Sbjct: 2   LKGYGAVILDGAWLTLQLALSSMALAIVLGLIGVALRLSPVRWLAWLGDLYSTVIRGIPD 61

Query: 64  LVLMMLIFFGGQILLNNGLSWFNEFINQWLTARDPNHEWVAYLPDYVDISPFVAGVLTIG 123
           LVL++LIF+GGQ ++N                            DY+D++P +AG+ T+G
Sbjct: 62  LVLILLIFYGGQDIINRVAPLLG-------------------YEDYIDLNPLIAGIGTLG 102

Query: 124 FIFGAYMAETFRGAILAVDKGELEAAKAYGMSAAMSFRRILLPQMIRHAIPGFGNNWLVL 183
           FIFGAY++ETFRGA L + KG+ EA  AYGMS    F RI +PQMIR AIPGF NNWLVL
Sbjct: 103 FIFGAYLSETFRGAFLGIPKGQAEAGVAYGMSPRQVFFRIQVPQMIRLAIPGFTNNWLVL 162

Query: 184 LKTTALVSIIGLEDMVRISSLAAGSTKMPFTFYMAVAIIFLFFTSVSTGLLKLLERKFSI 243
            K TAL+S++GL+DM+  +  AA +T+ PFTF++AVA ++L  TSVS   LK LER++S+
Sbjct: 163 TKATALISVVGLQDMMFKAKQAADATREPFTFFLAVAALYLVLTSVSLLALKYLERRYSV 222