Pairwise Alignments

Query, 225 a.a., amino acid ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 220 a.a., ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

 Score =  132 bits (331), Expect = 7e-36
 Identities = 68/202 (33%), Positives = 117/202 (57%), Gaps = 5/202 (2%)

Query: 2   DFSLIIDSLPIYLSGLWTTVWLVSLSLVIGLLCAIPLAIARNSKQKWFSLPAWGYIYFLR 61
           DF  ++   P+ L G+  T+ L ++  V+G++     A AR +   W  +    Y+  +R
Sbjct: 6   DFGAVLSEWPLLLRGVAWTIGLTAVGTVLGMIVGTFCAWARANGPAWLRIVVGTYVELIR 65

Query: 62  GTPLLVQLYLIYYGMDQWFPVKDTLWEHAWFCALVAFILNTSAYTAEIIRGAINGLPKGE 121
            TP +VQL+ I++G+    P            +++A +LN  AY+ EIIR  I   PKG+
Sbjct: 66  NTPFIVQLFFIFFGL----PAAGVKLSPE-VASVIAMVLNLGAYSTEIIRAGIEATPKGQ 120

Query: 122 VEAAKAYGMSRFQTYQRIILPSALRRSLPAYSNEVIFMLHGSAVAGIVTIMDLTGAARLV 181
           +EAA +  +S+ Q + R++LP AL++  PA  ++++ ++ GSAV G ++  +L+ AA L+
Sbjct: 121 IEAAVSLALSKSQVFLRVVLPPALKKVWPAMVSQIVIVMLGSAVCGQISTEELSYAANLI 180

Query: 182 NSRYYAPFEAFLSAGLFYMALT 203
            SR +  FEAF+ A L Y+AL+
Sbjct: 181 QSRNFRAFEAFIVATLIYLALS 202