Pairwise Alignments

Query, 225 a.a., amino acid ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 232 a.a., Arginine/ornithine ABC transporter, permease protein AotM from Pseudomonas sp. S08-1

 Score =  264 bits (675), Expect = 9e-76
 Identities = 126/227 (55%), Positives = 180/227 (79%), Gaps = 4/227 (1%)

Query: 2   DFSLIIDSLPIYLSGLWTTVWLVSLSLVIGLLCAIPLAIARNSKQKWFSLPAWGYIYFLR 61
           D+++++DSLP+Y  G+  T+ L+ +SL +GLL A+PLA+ R SKQ   + PAW Y Y +R
Sbjct: 4   DYNVVLDSLPLYFGGVLVTLKLLVISLAVGLLAAVPLAMMRVSKQAAINFPAWLYTYVIR 63

Query: 62  GTPLLVQLYLIYYGMDQWFPVKDT-LWEH---AWFCALVAFILNTSAYTAEIIRGAINGL 117
           GTP+LVQLYL+YYG+ Q+  V+++ +W +   A FCA +AF +NTSAY+AEI+ G++   
Sbjct: 64  GTPMLVQLYLLYYGLAQFEAVRESFMWPYLSNATFCACLAFAINTSAYSAEILAGSLKAT 123

Query: 118 PKGEVEAAKAYGMSRFQTYQRIILPSALRRSLPAYSNEVIFMLHGSAVAGIVTIMDLTGA 177
           P GE+EAAKA GMSR + Y+RI+LPSALRR+LP YSNEVI MLH +++A +VT++D+TGA
Sbjct: 124 PYGEIEAAKAMGMSRGKLYRRILLPSALRRALPQYSNEVIMMLHTTSLASVVTLIDITGA 183

Query: 178 ARLVNSRYYAPFEAFLSAGLFYMALTFIILWCFKQAEQRFLAYLKPR 224
           A+ VNS+YY PFEA+++AG+FY+ LTF+++  FK AE+R+LAYL PR
Sbjct: 184 AKTVNSQYYLPFEAYITAGVFYLCLTFVLVRLFKLAERRWLAYLAPR 230