Pairwise Alignments

Query, 225 a.a., amino acid ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 229 a.a., Octopine transport system permease protein OccM from Pseudomonas sp. DMC3

 Score =  198 bits (503), Expect = 8e-56
 Identities = 109/221 (49%), Positives = 155/221 (70%), Gaps = 8/221 (3%)

Query: 1   MDFSLIIDSLPIYLSGLWTTVWLVSLSLVIGLLCAIPLAIARNSKQKWF--SLPAWGYIY 58
           M++ +II  LP    G   T+ LV+++++ GLL AIPL IAR+SK +W+  SLP + YI+
Sbjct: 1   MNWEVIIKWLPKLAQGATLTLELVAIAVIAGLLLAIPLGIARSSK-RWYVRSLP-YAYIF 58

Query: 59  FLRGTPLLVQLYLIYYGMDQWFPVKDT-LWEHA---WFCALVAFILNTSAYTAEIIRGAI 114
           F RGTPLLVQL+L+YYG+ Q+  V+++ LW +    ++CA V   L+T+AY AEI+RGAI
Sbjct: 59  FFRGTPLLVQLFLVYYGLAQFDAVRESALWPYLRDPFWCATVTMTLHTAAYIAEILRGAI 118

Query: 115 NGLPKGEVEAAKAYGMSRFQTYQRIILPSALRRSLPAYSNEVIFMLHGSAVAGIVTIMDL 174
             +P GE+EAA+A GMSR +    IILP A R  LPAYSNEVI ML  SA+A  VT+++L
Sbjct: 119 QAIPPGEIEAARALGMSRPKAMFYIILPRAARIGLPAYSNEVILMLKASALASTVTLLEL 178

Query: 175 TGAARLVNSRYYAPFEAFLSAGLFYMALTFIILWCFKQAEQ 215
           TG AR + +R Y P E F +AG+FY+ + ++++  FK  E+
Sbjct: 179 TGMARTIIARTYLPVEIFFAAGVFYLVMAYVLVRGFKLLER 219