Pairwise Alignments

Query, 225 a.a., amino acid ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 237 a.a., Histidine ABC transporter, permease protein HisM (TC 3.A.1.3.1) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  197 bits (500), Expect = 2e-55
 Identities = 108/228 (47%), Positives = 145/228 (63%), Gaps = 15/228 (6%)

Query: 9   SLPIYLSGLWTTVWLVSLSLVIGLLCAIPLAIARNSKQKWFSLPAWGYIYFLRGTPLLVQ 68
           +L +Y  GL TTVWL+  SL +G + A+  A+A  S           Y Y +RGTPLL+Q
Sbjct: 11  NLAMYGEGLITTVWLLLSSLGVGAVLALLFALALTSSIAPLRWIVGAYTYVIRGTPLLIQ 70

Query: 69  LYLIYYGMDQ--WFPVKDTLWEHAW---------FCALVAFILNTSAYTAEIIRGAINGL 117
           LYLIYYG+ Q  W   +   W   W         FCAL+AF LNT+ YTAE++ GAI   
Sbjct: 71  LYLIYYGLAQLDWIQAR---WNDVWPWTHFKEPFFCALLAFSLNTAGYTAEMLAGAIRET 127

Query: 118 PKGEVEAAKAYGMSRFQTYQRIILPSALRRSLPAYSNEVIFMLHGSAVAGIV-TIMDLTG 176
             GE+EAA+A GMS     +RI+LPSA+RR+LPAYSNEV+ MLH +++A  V  ++D+T 
Sbjct: 128 AAGEIEAAQAMGMSPAMAMRRIVLPSAMRRTLPAYSNEVVMMLHATSLASTVPAMLDVTA 187

Query: 177 AARLVNSRYYAPFEAFLSAGLFYMALTFIILWCFKQAEQRFLAYLKPR 224
           AA  + S YY PFEA++ A   Y+ +TF ++  FK AE+RFLA+L PR
Sbjct: 188 AASRIYSDYYLPFEAYIFAAAIYLTITFSLVGMFKLAERRFLAHLAPR 235