Pairwise Alignments

Query, 225 a.a., amino acid ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 238 a.a., histidine/lysine/arginine/ornithine transporter subunit (NCBI) from Escherichia coli BW25113

 Score =  192 bits (488), Expect = 5e-54
 Identities = 103/216 (47%), Positives = 143/216 (66%), Gaps = 5/216 (2%)

Query: 15  SGLWTTVWLVSLSLVIGLLCAIPLAIARNSKQKWFSLPAWGYIYFLRGTPLLVQLYLIYY 74
           +G+  T+WL+ LS+VIG + A+ LAI R S  K+   P W + Y  RGTPL VQL + Y 
Sbjct: 21  TGVAITLWLLILSVVIGGVLALFLAIGRVSSNKYIQFPIWLFTYIFRGTPLYVQLLVFYS 80

Query: 75  GMDQWFPVKDTLWEHAWF-----CALVAFILNTSAYTAEIIRGAINGLPKGEVEAAKAYG 129
           GM     VK T + +A+F     C ++A  LNT AYT EI  GAI  +P GE+EAA+AYG
Sbjct: 81  GMYTLEIVKGTEFLNAFFRSGLNCTVLALTLNTCAYTTEIFAGAIRSVPHGEIEAARAYG 140

Query: 130 MSRFQTYQRIILPSALRRSLPAYSNEVIFMLHGSAVAGIVTIMDLTGAARLVNSRYYAPF 189
            S F+ Y+ IILPSALR +LPAYSNEVI MLH +A+A   T+ DL   AR +N+  Y PF
Sbjct: 141 FSTFKMYRCIILPSALRIALPAYSNEVILMLHSTALAFTATVPDLLKIARDINAATYQPF 200

Query: 190 EAFLSAGLFYMALTFIILWCFKQAEQRFLAYLKPRS 225
            AF  A + Y+ ++++++  F++AE+R+L ++KP S
Sbjct: 201 TAFGIAAVLYLIISYVLISLFRRAEKRWLQHVKPSS 236