Pairwise Alignments

Query, 225 a.a., amino acid ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 229 a.a., Octopine transport system permease protein OccM from Azospirillum sp. SherDot2

 Score =  191 bits (484), Expect = 1e-53
 Identities = 101/229 (44%), Positives = 153/229 (66%), Gaps = 4/229 (1%)

Query: 1   MDFSLIIDSLPIYLSGLWTTVWLVSLSLVIGLLCAIPLAIARNSKQKWFSLPAWGYIYFL 60
           M++ L+ DSLP  L GL  T+ L+  SL +G L A  +A+ R S  +     A  Y++  
Sbjct: 1   MNWQLMWDSLPRMLGGLTLTLELIVGSLALGALVAFGVALLRLSGNRVVETLAAAYVFVF 60

Query: 61  RGTPLLVQLYLIYYGMDQWFPVKDT-LW---EHAWFCALVAFILNTSAYTAEIIRGAING 116
           RGTPLLVQ++L+YYG+ Q+  ++D+ LW      ++CA++A  LNT AYT+E++RGAI  
Sbjct: 61  RGTPLLVQIFLVYYGLGQFEFIRDSILWPFLREPYWCAILALTLNTGAYTSEVLRGAILS 120

Query: 117 LPKGEVEAAKAYGMSRFQTYQRIILPSALRRSLPAYSNEVIFMLHGSAVAGIVTIMDLTG 176
           +P+G+VEAA+A GMSR   ++RI+LP A+R+ LPAY NEVI M+  +++A  +T+M++TG
Sbjct: 121 VPQGQVEAARACGMSRALAFRRIVLPVAIRQMLPAYGNEVILMVKATSLASTITLMEVTG 180

Query: 177 AARLVNSRYYAPFEAFLSAGLFYMALTFIILWCFKQAEQRFLAYLKPRS 225
            AR + ++ +A FE F+ AG+ Y+ L FI     K AE R   YL+ R+
Sbjct: 181 IARRMIAQTFAVFELFIVAGVIYLVLNFIATRLIKFAEWRLTPYLRARA 229