Pairwise Alignments

Query, 225 a.a., amino acid ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 241 a.a., ABC transporter, membrane spanning protein (nopaline) from Agrobacterium fabrum C58

 Score =  192 bits (487), Expect = 6e-54
 Identities = 95/211 (45%), Positives = 145/211 (68%), Gaps = 5/211 (2%)

Query: 1   MDFSLIIDSLPIYLSGLWTTVWLVSLSLVIGLLCAIPLAIARNSKQKWFSLPAWGYIYFL 60
           MD  LII+S P  L+ + TT+ L  +SL+IG + ++P+A+ R SK +  S  A+GY+Y +
Sbjct: 1   MDIQLIIESFPKLLAAVPTTLTLAFISLLIGFVVSVPVALMRLSKNRIVSSLAYGYVYII 60

Query: 61  RGTPLLVQLYLIYYGMDQWFPVKDT--LWE---HAWFCALVAFILNTSAYTAEIIRGAIN 115
           R TPLLVQ++LIYYG  Q+  V     LW      WFCA++A  LNT+AYT+EIIRG I 
Sbjct: 61  RSTPLLVQMFLIYYGSAQFRGVLSEVGLWSSFREPWFCAILALALNTAAYTSEIIRGGIQ 120

Query: 116 GLPKGEVEAAKAYGMSRFQTYQRIILPSALRRSLPAYSNEVIFMLHGSAVAGIVTIMDLT 175
            +  G++EAA+A GMS F  ++RI+ P A+R++LPAY NEV+ ++  +++A  +TI+++T
Sbjct: 121 SVSLGQIEAARAVGMSTFLQFRRIVFPIAIRQALPAYGNEVMLIIKSTSLASTITIVEVT 180

Query: 176 GAARLVNSRYYAPFEAFLSAGLFYMALTFII 206
           G A+ + S  Y+P E F+ AG  Y+ +TF++
Sbjct: 181 GLAKQIISATYSPVEVFIVAGAIYLFITFVV 211