Pairwise Alignments

Query, 225 a.a., amino acid ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 229 a.a., ABC transporter, membrane spanning protein from Agrobacterium fabrum C58

 Score =  159 bits (403), Expect = 3e-44
 Identities = 90/224 (40%), Positives = 132/224 (58%), Gaps = 8/224 (3%)

Query: 1   MDFSLIIDSLPIYLSGLWTTVWLVSLSLVIGLLCAIPLAIARNSKQKWFSLPAWGYIYFL 60
           MDFS +    P+ LSG W T+ L+ +S+ IG + AI LA A+ S  +   + A  Y  F 
Sbjct: 1   MDFSWVAKYWPLLLSGAWQTLALLVISVSIGFVLAIGLAFAQVSGGRVTKILARAYCTFF 60

Query: 61  RGTPLLVQLYLIYYGMDQWFPV-----KDTLW---EHAWFCALVAFILNTSAYTAEIIRG 112
           RGTPLL+QL+L+YYG+  + P+     +  +W      +F A V+F LN +AY AE++RG
Sbjct: 61  RGTPLLIQLWLLYYGVGSFLPMIPGLRQSFMWPVLREGFFFAAVSFTLNYAAYEAEVLRG 120

Query: 113 AINGLPKGEVEAAKAYGMSRFQTYQRIILPSALRRSLPAYSNEVIFMLHGSAVAGIVTIM 172
           A+  +PKGE+EA +A+GM RF   +RI LP A+R +LP  + EV+  L  + +A  VT+M
Sbjct: 121 ALLAVPKGELEAGRAFGMGRFTLIRRIWLPRAIRIALPTITGEVVMQLKATPLAFTVTVM 180

Query: 173 DLTGAARLVNSRYYAPFEAFLSAGLFYMALTFIILWCFKQAEQR 216
           DL   A  V       +E  +   +FY+ LT II  CF   E++
Sbjct: 181 DLYAVAYKVRQDTLLVYEPLIVVTVFYLILTAIIARCFGLVERQ 224