Pairwise Alignments

Query, 706 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 639 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  227 bits (578), Expect = 2e-63
 Identities = 129/355 (36%), Positives = 202/355 (56%), Gaps = 3/355 (0%)

Query: 352 RSELMVGTLM-VVVGLLVVTLMAMRLVRPIRAVAERLQDISSGEGDLTQRLQVNSADEIG 410
           RS  ++ TL+ ++VG++   ++  ++ RPI+     ++ I+SG  DL+  +QV   DE+G
Sbjct: 287 RSLQLISTLLALLVGVIAALVITRQITRPIQETLAVVERIASG--DLSHNIQVTRRDELG 344

Query: 411 QLAQGFNLFMDKLQPIIRRVVDNTGQVVSTTEQVKSTVESTRRSSEAQFKEVDSVATAAE 470
            L QG       L+ +I  + D   Q+ S  E++ +  E T     +Q  E D VATA  
Sbjct: 345 VLQQGIQRMGTTLRELISGIRDGVTQIASAAEELSAVTEQTSAGVNSQKIETDQVATAMH 404

Query: 471 EMTQTSAHVVENAQRAVNAASDAQRAAQTGDEVIRHSQMQMNQLVDRMNLAVPVVEELAR 530
           EMT T   V  NA++A  AA+DA   A+ GD+V+  +  Q+ +L   +  +   +  L +
Sbjct: 405 EMTATVQEVARNAEQASLAAADADGQARAGDKVVAEAIAQIERLAAEVARSTDAMTHLQQ 464

Query: 531 NNTGIIEILSVIEGISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASRTQASVGE 590
            +  I  ++ VI+ ++EQTNLLALNAAIEAARAGE GRGFAVVADEVR LA RTQ S  E
Sbjct: 465 ESNKIGSVMDVIKAVAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRGLAQRTQKSTEE 524

Query: 591 IRSVINKVELGTQDVVKAIQGSNETAQATAEQVADAVTQLNRVFSAIHAINEMSHQIVQA 650
           I  ++  ++ GTQ V   +  S     ++ E    A   L  +   +  I  M+ QI  A
Sbjct: 525 IEGLVAGLQNGTQQVANVMNNSRSLTDSSVELTRKAGVSLENITRTVSNIQSMNQQIAAA 584

Query: 651 AQDQQTVSAQVTQSVVNIRDLSAQILSETEASEKVGEQIARLSFEQQTLVGQFKV 705
           A+ Q  V+ ++++S+VN+RD+S Q  + ++ + K   ++ARL  + Q +V  F+V
Sbjct: 585 AEQQSAVAEEISRSIVNVRDVSEQTATASDETAKSSVELARLGSQLQQMVSHFRV 639



 Score = 25.8 bits (55), Expect = 0.007
 Identities = 18/94 (19%), Positives = 40/94 (42%), Gaps = 1/94 (1%)

Query: 588 VGEIRSVINKVELGTQDVVKAIQGSNETAQATAEQVADAVTQLNRVFSAIHAINEMSHQI 647
           + E +S+I   +     + +A +  N + Q   ++   A  Q+N + +++  + + S  +
Sbjct: 106 LNEQKSIITAYQQSLNKMREAYRNGNASRQVMGDKADIANAQINALETSVKQMPDSSEHL 165

Query: 648 VQAAQDQQTVSAQVTQSVVNIRDLSAQILSETEA 681
            Q  Q       Q   +   +R  +  +  ETEA
Sbjct: 166 AQ-FQAVADAKMQFQLARYEVRGYTGNVSPETEA 198