Pairwise Alignments

Query, 706 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 715 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  432 bits (1111), Expect = e-125
 Identities = 260/715 (36%), Positives = 392/715 (54%), Gaps = 12/715 (1%)

Query: 1   MRQISVQWKITLLAGLCLVFTSLALIGFSIYNARASQQTAKLQSSESVIDKSQQLLQTGA 60
           +RQ+S+QWKITLLAGLCL+     L+G S+Y    S Q  K  S + + + +Q  ++   
Sbjct: 3   LRQLSIQWKITLLAGLCLLGIVTLLVGLSLYRMEQSSQQVKASSMQMLDEAAQARIEAQG 62

Query: 61  LLNATEISEYLSEAIYRAEMLAANALFLKNNSEENFGESEVLRTSLDEMVRKSVLGFDTI 120
            + A  I     +A       +   LFL+  +E+ F ++   R  L   V+ ++     +
Sbjct: 63  EVQALGIRRQFMDAYQYGHGFSRQVLFLREQAEKRFLDAFDTREDLTRQVKAALQANPDL 122

Query: 121 EGAYLVFRPNMLDSEDSNYVNADYVGSNDIGQFAAYWTKAANGQNVISRVLTQAQLTE-- 178
            G  LVF  N LD +D  +     +GSND G+FA YW++   G+ + S  L ++ +++  
Sbjct: 123 LGLSLVFEANALDGKDELFAGQAELGSNDKGRFALYWSQPTPGK-LESMALPESDMSDTS 181

Query: 179 -----ESNKERFVCPIEQASPCITSPRMVEFETGRYLATSLSVPILIDGVAIGFYGIDLT 233
                E     F CP     PC+  P          L TS+  P++ +G  I    +D+ 
Sbjct: 182 VGPSGEKANAWFTCPRTLLKPCVIEPYFYRINGQNVLMTSIVFPLMANGKVIASLSVDIN 241

Query: 234 LAPLIGITQKSDNNLFDGQGKVSIVSENNALVASDAAFLTLGETFQSENLSRST--VSSL 291
           L  L  ++Q++   L+DGQ +VSI+S    L         L +     + +     + +L
Sbjct: 242 LNSLQAVSQQASQKLYDGQTQVSILSPTGLLAGYSPDASKLSQRLDQVDTANGAQLIGAL 301

Query: 292 LQAGQVNTQWSEDG-QWLVVFAPIKVANQNWGIIFEMPRQSVMQDAEQLDILLTEQLERG 350
             +  + +  ++   + L  FAPI    + WG++ ++P + ++  AE L   +  +  RG
Sbjct: 302 ASSTHIRSLRTDHQLKVLAPFAPIP-EGKPWGVLLDVPEKVLVGPAEALKAQMDAENTRG 360

Query: 351 IRSELMVGTLMVVVGLLVVTLMAMRLVRPIRAVAERLQDISSGEGDLTQRLQVNSADEIG 410
              EL +G L  VVGL++V LMA  + RPI  VA  L+DI+SGEGDLT+RL  +  DE+G
Sbjct: 361 TLLELGLGLLAAVVGLILVWLMARSVTRPILGVAHMLEDIASGEGDLTRRLAYDKQDELG 420

Query: 411 QLAQGFNLFMDKLQPIIRRVVDNTGQVVSTTEQVKSTVESTRRSSEAQFKEVDSVATAAE 470
           QLA  FN F+DKLQPII  V  +      T +Q  +    T    E Q+++VD VATA+ 
Sbjct: 421 QLAGWFNRFLDKLQPIIAEVKRSVQDARGTADQSAAIATQTSAGMEQQYRQVDQVATASH 480

Query: 471 EMTQTSAHVVENAQRAVNAASDAQRAAQTGDEVIRHSQMQMNQLVDRMNLAVPVVEELAR 530
           EM+ T+  V  +A +A  AA DA +A + G  VI H+   +  L   M+ A+  VE LA 
Sbjct: 481 EMSATAQDVARSAAQAAQAARDADQATRDGLTVIEHTTHNIGALASDMSTAMTQVEGLAA 540

Query: 531 NNTGIIEILSVIEGISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASRTQASVGE 590
           N+  I  +L VI GI+EQTNLLALNAAIEAARAGE GRGFAVVADEVR+LA RTQ SV E
Sbjct: 541 NSEKIGSVLEVIRGIAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRNLAQRTQESVEE 600

Query: 591 IRSVINKVELGTQDVVKAIQGSNETAQATAEQVADAVTQLNRVFSAIHAINEMSHQIVQA 650
            R VI  ++ GT+ VV ++  S   AQ + EQV  AVT L ++  A+  I++M+ QI  A
Sbjct: 601 TRLVIEHLQNGTEAVVGSMGNSYRQAQGSVEQVGQAVTALRQIGDAVTVISDMNLQIASA 660

Query: 651 AQDQQTVSAQVTQSVVNIRDLSAQILSETEASEKVGEQIARLSFEQQTLVGQFKV 705
           A++Q  V+ ++  +V  IRD++  +  +   S +V + +  L+ +QQ L+ QF+V
Sbjct: 661 AEEQSAVAEEINNNVATIRDVTESLSEQANESARVSQALNSLANQQQGLMDQFRV 715