Pairwise Alignments

Query, 706 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 712 a.a., Methyl-accepting chemotaxis sensor/transducer protein from Pseudomonas sp. S08-1

 Score =  367 bits (943), Expect = e-106
 Identities = 233/729 (31%), Positives = 382/729 (52%), Gaps = 41/729 (5%)

Query: 1   MRQISVQWKITLLAGLCLVFTSLALIGFSIYNARASQQTAKLQSS---ESVIDKSQQLL- 56
           MR  S+Q+ + +LAG  ++   +AL+ ++++ +  +Q     ++    E VID+    L 
Sbjct: 1   MRFKSIQFSVVVLAGASVLAVVVALVLYALFASSRTQTLVHERTQGLLEQVIDQRLVALA 60

Query: 57  --QTGALLNATEISEYLSEAIYRAEMLAANALFLKNNSEENFGESEVLRTSLDEMVRKSV 114
             Q G L    E    LS+++               NS+   G     + SL      ++
Sbjct: 61  EAQVGKLQRQFEAPMTLSKSLATL------------NSQMAPGADGAAKVSLSRDELSTL 108

Query: 115 LGF-----DTIEGAYLVFRPNMLDSEDSNYVNADYVGSNDIGQFAAYWTKAANGQNVISR 169
           +G        +   Y+ + PN  D +D  Y   +  G +  G+F  +W +  +G      
Sbjct: 109 VGVYLEKNPELIDLYIGWEPNAFDQDDDLYAGQEAAGYDATGRFMPWWYR--DGGQFKVA 166

Query: 170 VLTQAQLTEES-------NKERFVCPIEQASPCITSPRMVEFETGRYLATSLSVPILIDG 222
            LT  Q+  E          E ++CP     PC+  P   +F   + L +S + PIL+DG
Sbjct: 167 PLTAVQMESEKLLPTGVREGEYYLCPKASKQPCVVDPASYDFGGKQVLVSSFNAPILVDG 226

Query: 223 VAIGFYGIDLTLAPLIGITQKSDNNLFDGQGKVSIVSENNALVASDAAFLTLGE----TF 278
              G  G DL L  + G+   ++  L++G G++++++ N  L+A+      +G+      
Sbjct: 227 QFKGVVGNDLALDFIQGLLTSANGELYEGAGELALIAANGTLIAATKDATLVGQPAAKVL 286

Query: 279 QSENLSRSTVSSLLQAGQVNTQWSEDGQWLVVFAPIKVANQN--WGIIFEMPRQSVMQDA 336
            +E L R   SS     +   +  E+ Q   +  P +VA  +  W +   +P  +V  D 
Sbjct: 287 DAELLERLKQSS---GTEPILKLDEEQQLFQLLLPFQVAGTSTRWTLAITLPTSAVFADL 343

Query: 337 EQLDILLTEQLERGIRSELMVGTLMVVVGLLVVTLMAMRLVRPIRAVAERLQDISSGEGD 396
           +QL   L EQ  +      +VG L+  +GLLV+  +   + RP++ +A  L DI+ G+GD
Sbjct: 344 QQLQAGLAEQANQDTFGMALVGLLIAALGLLVIWFVGYGIARPLKDMAAMLDDIAKGDGD 403

Query: 397 LTQRLQVNSADEIGQLAQGFNLFMDKLQPIIRRVVDNTGQVVSTTEQVKSTVESTRRSSE 456
           LT RLQV+ ADE+GQ+A GFN F++KLQ +IR VV +  +V  ++E        T +  +
Sbjct: 404 LTVRLQVDRADELGQIASGFNTFLNKLQNMIRDVVTSVQKVSDSSEHTADIAIRTNQGVQ 463

Query: 457 AQFKEVDSVATAAEEMTQTSAHVVENAQRAVNAASDAQRAAQTGDEVIRHSQMQMNQLVD 516
            Q  E+D VATA  EMT T+  V  NA +A  AAS A R+A  G  ++  +   ++ L  
Sbjct: 464 RQMAEIDQVATAVHEMTATAQDVARNATQAAEAASHADRSANDGKRIVEGTAKAISALAG 523

Query: 517 RMNLAVPVVEELARNNTGIIEILSVIEGISEQTNLLALNAAIEAARAGEQGRGFAVVADE 576
            +  AV VV+ LA+++  I  IL  I GI+EQTNLLALNAAIEAARAGEQGRGFAVVADE
Sbjct: 524 EIGRAVSVVQTLAKDSENINAILVAIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADE 583

Query: 577 VRSLASRTQASVGEIRSVINKVELGTQDVVKAIQGSNETAQATAEQVADAVTQLNRVFSA 636
           VR+LA +TQ +  EI+S+I +++ GT++VV  ++ S      + +Q   A + L  +  A
Sbjct: 584 VRNLAQKTQQATEEIQSMIQQLQHGTREVVTVMEQSQARTDDSVQQAQIAASALENITQA 643

Query: 637 IHAINEMSHQIVQAAQDQQTVSAQVTQSVVNIRDLSAQILSETEASEKVGEQIARLSFEQ 696
           +  IN+M+ QI  AA++Q  V+  + ++V NI  ++A++    + +     ++ +L+ +Q
Sbjct: 644 VSVINDMNTQIASAAEEQSAVAEDINRNVTNIGQVAAEVAGGADEASGASAELTKLAEQQ 703

Query: 697 QTLVGQFKV 705
           + L+ QF+V
Sbjct: 704 RRLINQFRV 712