Pairwise Alignments

Query, 706 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 541 a.a., hypothetical protein from Pseudomonas sp. DMC3

 Score =  214 bits (545), Expect = 9e-60
 Identities = 124/353 (35%), Positives = 200/353 (56%), Gaps = 5/353 (1%)

Query: 356 MVGTLMVVVG---LLVVTLMAMRLVRPIRAVAERLQDISSGEGDLTQRLQVNSADEIGQL 412
           +V TL+V+     LL   L+ + + +PI    E  + I+  EG+LTQ + V+  DE G+L
Sbjct: 191 LVVTLLVIASGLTLLFAWLLTVSITKPISKALEAAETIA--EGNLTQPIHVDGEDEAGRL 248

Query: 413 AQGFNLFMDKLQPIIRRVVDNTGQVVSTTEQVKSTVESTRRSSEAQFKEVDSVATAAEEM 472
                    KL+  ++R+  +  Q+ S  E++ S  + + R    Q  E++  ATA  EM
Sbjct: 249 LAAMAKMQSKLRDTLQRISGSATQLASAAEELNSVTDESARGLTQQNNEIEQAATAVNEM 308

Query: 473 TQTSAHVVENAQRAVNAASDAQRAAQTGDEVIRHSQMQMNQLVDRMNLAVPVVEELARNN 532
           T     V  NA     A+ +A  +A  G ++++ +   + ++   +     ++ +LA  +
Sbjct: 309 TSAVEEVARNAVSTSEASKNATTSAGDGRDLVQETVSAIERMSADVQSTASLIGDLANES 368

Query: 533 TGIIEILSVIEGISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASRTQASVGEIR 592
             I ++L VI G+++QTNLLALNAAIEAARAGE GRGFAVVADEVR+LA RTQ S  EI 
Sbjct: 369 RDIGKVLDVIRGLADQTNLLALNAAIEAARAGEAGRGFAVVADEVRALAHRTQQSTSEIE 428

Query: 593 SVINKVELGTQDVVKAIQGSNETAQATAEQVADAVTQLNRVFSAIHAINEMSHQIVQAAQ 652
            +I  ++ GT+  V +++ S E A++T      A   L+ + SAI  INE +  I  AA+
Sbjct: 429 RMIGSIQSGTEHAVDSMRNSTERAESTLNIARGAGMSLDTINSAIVEINERNLVIASAAE 488

Query: 653 DQQTVSAQVTQSVVNIRDLSAQILSETEASEKVGEQIARLSFEQQTLVGQFKV 705
           +Q  V+ +V +++VNIRDLS Q  +    +     +++RL+ +   +VG+F +
Sbjct: 489 EQAQVAREVDRNLVNIRDLSVQSATGANQTSAASNELSRLALDLNNMVGRFSL 541