Pairwise Alignments

Query, 259 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 259 a.a., membrane protein from Pseudomonas simiae WCS417

 Score =  260 bits (665), Expect = 2e-74
 Identities = 126/253 (49%), Positives = 177/253 (69%), Gaps = 3/253 (1%)

Query: 5   IEPTTIMVLALVAFIAGFIDAVAGGGGMLTVPALLSLGLPPHLALGTNKLAATFASSTAA 64
           ++ TT+ +LA+VAFIAGFIDA+AGGGG+LT PALL+ G+PPHL LGTNKL++TF S+TA+
Sbjct: 7   VDLTTLAILAIVAFIAGFIDAIAGGGGLLTTPALLTAGMPPHLVLGTNKLSSTFGSATAS 66

Query: 65  WTYYRQKLFDPACWKRAFIATLIGAILGTLAVDAISTDWLRKVLPLIILAAALYTVLHRP 124
           +T+YR+KLF P  W  A + TL+GA+ G +    +  + L K+LP+I+ A  +Y +    
Sbjct: 67  FTFYRRKLFHPRQWVHAIVGTLVGALTGAVVAHYLPAETLNKMLPVIVFACGVYLLF--- 123

Query: 125 HQTEQSVTPEPCPKLHRKQILQGIGLGFYDGLAGPGTGAFWTVSSMALYRFNILLASGLA 184
             T ++      P   + Q  QG  LGFYDG+AGPGTGAFWTVS+M L+  +++ ASG+A
Sbjct: 124 GGTPKAPLDADAPIKKKWQSTQGFSLGFYDGVAGPGTGAFWTVSTMLLHPIDLVKASGVA 183

Query: 185 KAMNLTSNFTSLVTFALLGHIDWLLGLTMGVCLMAGAYVGAHSAIRFGAPFIRPLFILVV 244
           ++MN  SN  +L  F + G +DW++GL MG+ +M GA+ GA SAI  GA FIRP+FI VV
Sbjct: 184 RSMNFVSNAAALTVFIINGSVDWIVGLAMGISVMCGAFFGARSAISGGAKFIRPVFITVV 243

Query: 245 TILAGKLAYDAWW 257
             L  +LA+  W+
Sbjct: 244 LGLTVRLAWQHWF 256