Pairwise Alignments

Query, 259 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 261 a.a., membrane protein from Pseudomonas simiae WCS417

 Score = 68.2 bits (165), Expect = 2e-16
 Identities = 70/256 (27%), Positives = 116/256 (45%), Gaps = 21/256 (8%)

Query: 15  LVAFIAGFIDAVAG-GGGMLTVPALLSLGLPPHLALGTNKLAATFASSTAAWTYYRQKLF 73
           +   I GFI  + G GGG L  P LL  G+ P  A+GT+ L A    S     + + K  
Sbjct: 10  IAGLIVGFIVGMTGVGGGSLMTPILLWFGINPATAVGTDLLYAAITKSGGVLVHSKNKNI 69

Query: 74  DPACWKRAFIATLIGAILGTLAVDAISTD------WLRKVLPLIILAAALYTVLHRP--- 124
           D A      + ++   +L    + ++ TD       +++ L +++L  AL  +  +    
Sbjct: 70  DWAITGWLTLGSVPAVLLTLWFLASLHTDPSVMNAVIKQALGVVLLLTALAILFKKSLLA 129

Query: 125 -HQTEQSVTPEPCPK-LHRKQILQGIGLGFYDGLAGPGTGAFWTVSSMALYRF---NILL 179
             Q     +    P+ L+   ++ G  LG    L   G GA  TV+   LY F     L+
Sbjct: 130 FAQRHAGDSYHMSPRNLNALTVVTGAVLGTMVALTSIGAGALGTVALFILYPFLATRRLV 189

Query: 180 ASGLAKAMNLTSNFTSLVTFALLGHIDW-LLG-LTMGVCLMAGAYVGAHSAIRFGAPFIR 237
            + +A A+ LT    + +  A +G++DW LLG L MG   + G YVG+H   +     +R
Sbjct: 190 GTEIAHAVPLT--LVAGLGHASMGNMDWHLLGFLLMGS--LPGIYVGSHMTGKLPDGVLR 245

Query: 238 PLFILVVTILAGKLAY 253
           P   +++  +  KLA+
Sbjct: 246 PCLAVMLMAIGYKLAF 261