Pairwise Alignments

Query, 368 a.a., porin from Vibrio cholerae E7946 ATCC 55056

Subject, 378 a.a., Outer membrane protein C precursor from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 56.6 bits (135), Expect = 1e-12
 Identities = 79/337 (23%), Positives = 123/337 (36%), Gaps = 56/337 (16%)

Query: 25  MKKTLLALAV--LAAAGSVNAAEILKSDAGTVDFYGQLRTELKFLEDKDPTIGSGSSRAG 82
           MK  +L+L V  L  AG+ NAAEI   D   +D +G++     F +DK         R G
Sbjct: 1   MKVKVLSLLVPALLVAGAANAAEIYNKDGNKLDLFGKVDGLHYFSDDKGSDGDQTYMRIG 60

Query: 83  VDANYTVNDSLALQGKVEFAL-----KDSGDMYVRNHILGVK-TNFGKFSFGKQWTTSDD 136
                 VND L   G+ E+ +     + S D + R    G+K  + G F +G+ +  + D
Sbjct: 61  FKGETQVNDQLTGYGQWEYQIQGNQTEGSNDSWTRVAFAGLKFADAGSFDYGRNYGVTYD 120

Query: 137 VYG-ADYSYFFGGTGLRYGTLSDALHDSQVKYVYEADSFWVKAGYGFPEDNAKQELAELY 195
           V    D    FGG                    Y AD+F  + G G+    A     + +
Sbjct: 121 VTSWTDVLPEFGGD------------------TYGADNFMQQRGNGY----ATYRNTDFF 158

Query: 196 VGATFGDLAVHAGGGQNRDKAFKVGSNTVGTTTTDIKADVTNSYFEVTGEYTIGDALIGV 255
                 D A+   G          G NT G +  +   D           Y IG+     
Sbjct: 159 GLVDGLDFALQYQGKNGSVS----GENTNGRSLLNQNGDGYGGSL----TYAIGEG---- 206

Query: 256 TYYNAELDVENNPLVIDEDAISVAGTYKVADKTKLYAGYEYVMQEANTGADEDGTLVYLG 315
             ++    +  +    D++  + A  Y   D+  +Y G          G   D   +YL 
Sbjct: 207 --FSVGGAITTSKRTADQNNTANARLYGNGDRATVYTG----------GLKYDANNIYLA 254

Query: 316 VEY-KFASWARVYAEYGYGDGTTLGYTNKGSDAEVKA 351
            +Y +  +  R     G    T+ G+ NK  + EV A
Sbjct: 255 AQYSQTYNATRFGTSNGSNPSTSYGFANKAQNFEVVA 291