Pairwise Alignments

Query, 334 a.a., Holliday junction branch migration DNA helicase RuvB from Vibrio cholerae E7946 ATCC 55056

Subject, 440 a.a., recombination factor protein RarA from Pseudomonas simiae WCS417

 Score = 58.2 bits (139), Expect = 4e-13
 Identities = 38/124 (30%), Positives = 66/124 (53%), Gaps = 9/124 (7%)

Query: 25  IRPKKLADYQGQDHVRDQMEIFIQAAQMRQEALDHLLIFGPPGLGKTTLANIVANEMGVN 84
           +R   L +Y GQ+H+  + +   +A  + Q AL  ++ +GPPG+GKTTLA ++A     +
Sbjct: 17  LRSTNLDEYVGQEHLLARGKPLREA--LEQGALHSMIFWGPPGVGKTTLARLLAKVSDAH 74

Query: 85  IRTTSGPV-----LEKAGDLAALLT-NLEENDVLFIDEIHRLSPMVEEVLYPAMEDYQLD 138
             T S  +     + +A ++A        +  +LF+DE+HR +   ++   P +ED  L 
Sbjct: 75  FETVSAVLAGVKEIRQAVEVAKQQAGQYGKRTILFVDEVHRFNKSQQDAFLPYVEDGTL- 133

Query: 139 IMIG 142
           I IG
Sbjct: 134 IFIG 137