Pairwise Alignments

Query, 334 a.a., Holliday junction branch migration DNA helicase RuvB from Vibrio cholerae E7946 ATCC 55056

Subject, 430 a.a., Replication-associated recombination protein RarA from Variovorax sp. SCN45

 Score = 52.4 bits (124), Expect = 2e-11
 Identities = 48/186 (25%), Positives = 81/186 (43%), Gaps = 38/186 (20%)

Query: 25  IRPKKLADYQGQDHVRD---QMEIFIQAAQMRQEALDHLLIFGPPGLGKTTLANIVANEM 81
           +RP+ L +  GQ H+      + I  ++ Q         +++GPPG GKTT+A ++A+  
Sbjct: 13  LRPRTLGEVIGQQHLLGPGMSLRIAFESGQPHS-----CILWGPPGTGKTTIARLMADAF 67

Query: 82  GVNIRTTSGPV-----LEKAGDLAALLTN--LEENDVLFIDEIHRLSPMVEEVLYPAMED 134
                + S  +     + +A DLA    +   ++  ++F+DE+HR +   ++   P +E 
Sbjct: 68  DAQFLSISAVLGGVKDIREAVDLATAARDGLTQQRTIVFVDEVHRFNKSQQDAFLPHVES 127

Query: 135 YQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGS--LTSPLRDRFGIVQRLEYYKVADLQ 192
                                 FT IGATT   S  + S L  R   V  L+     DL+
Sbjct: 128 --------------------GLFTFIGATTENPSFEVNSALLSR-AAVYVLQSLNEDDLK 166

Query: 193 HIVQRS 198
            IV R+
Sbjct: 167 QIVTRA 172